Jatropha Genome Database

JcCA0000872.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000872.20 + phase: 0 
         (529 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30068.m002671 conserved hypothetical protein                          794   0.0  

>30068.m002671 conserved hypothetical protein
          Length = 534

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/531 (76%), Positives = 447/531 (84%), Gaps = 3/531 (0%)

Query: 2   ACPLTTAFSMSHFIINGR-HYLPNRLFLHSQAILHSLP-TKASIGVSNGVKIFR-NHCQC 58
           + P  T   +SHF++    H+    LFLH Q  + + P +KAS  V NG++  R  +   
Sbjct: 4   SAPSATPQYLSHFLLTTNLHHSKQHLFLHPQPFVSTTPYSKASPVVFNGLQTIRYRYHSS 63

Query: 59  NLQKTSVPITVLEPNSRFFRMDSHETSYGRRIXXXXXXXXXXXXXITPSQSVSGILHLLV 118
           NL K+SVPI  LEPNSRF +M+  + S  R+               T SQSV G+LHLLV
Sbjct: 64  NLHKSSVPIRFLEPNSRFLQMECQDNSSSRKFSTKSLSSDGSATSSTLSQSVFGVLHLLV 123

Query: 119 SLGIILAMDKLLKKAFVAAAIKFPSALFGMFCIFSVLLILDSTIPAAATSLVNFFEPALL 178
           SLGIILAMDKLLKKAFVAAAIKFPSALFGMFCIFSVL+ILDSTIPAAATSL+NFFEPALL
Sbjct: 124 SLGIILAMDKLLKKAFVAAAIKFPSALFGMFCIFSVLMILDSTIPAAATSLMNFFEPALL 183

Query: 179 FIQRWXXXXXXXXXXXXXXXXRDIPAASGLKICYIVAGGWLASLCVAGFTAITVRKIVKT 238
           FIQRW                +DIPAASG+KIC+I+AGGWLASLCVAGFTAI+VRKIVKT
Sbjct: 184 FIQRWLPLFYVPSLVVLPLSVKDIPAASGIKICFIIAGGWLASLCVAGFTAISVRKIVKT 243

Query: 239 EMTDAEPMKKPSPFSPLEVWAWSGIFLVSFVAALWFPTALGTSARTCLPFLLASTVLGYM 298
           EMTDAEPM KPSPFSP+E+W W GIFLVSF AAL++PT+LGT+ARTCLPFLLASTV+GYM
Sbjct: 244 EMTDAEPMAKPSPFSPIEIWTWCGIFLVSFAAALFYPTSLGTTARTCLPFLLASTVIGYM 303

Query: 299 VGSGLPSSVKKAFHPIICCTLSADLAALAFGYLSHSGLNPVLGYYLTKVSADPGAGDVLM 358
           VGSGLPS+VKK FHPIICC LSADLAA AFGY+S SGL+PVLGYYLTK S++PGAGDVLM
Sbjct: 304 VGSGLPSAVKKIFHPIICCALSADLAAFAFGYVSRSGLDPVLGYYLTKASSNPGAGDVLM 363

Query: 359 GFLGSVILSFAFSMFKQRKLVKRHAAEIFTSVIFSTIFSLYSTALIGRLVGLEPTLTVSI 418
           GFLGSVILSFAFSMFKQRKLVKRHAAEIFTSVI ST+FSLYSTALIGRLVGLEPTLTVSI
Sbjct: 364 GFLGSVILSFAFSMFKQRKLVKRHAAEIFTSVILSTVFSLYSTALIGRLVGLEPTLTVSI 423

Query: 419 LPRCITVALALSIVSLFEGANSSLTAAVVVVTGLIGANFVQFALDKLKFRDPIARGIATA 478
           LPRCITVALALSIVSLFEGANSSLTAAVVVVTGL+GANFVQ  LDKL+FRDPIARGIATA
Sbjct: 424 LPRCITVALALSIVSLFEGANSSLTAAVVVVTGLVGANFVQATLDKLQFRDPIARGIATA 483

Query: 479 SSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAIIG 529
           SSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAI+G
Sbjct: 484 SSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLICSVPAVRQSLLAIVG 534