Jatropha Genome Database

JcCA0000831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000831.20 - phase: 0 
         (475 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30185.m000928 conserved hypothetical protein                          655   0.0  
29923.m000793 conserved hypothetical protein                          617   e-177
30063.m001449 Ribulose bisphosphate carboxylase large chain prec...   437   e-123
30184.m001172 conserved hypothetical protein                          244   8e-65
29813.m001455 DNA-directed RNA polymerase beta chain, putative        179   2e-45
30061.m000288 conserved hypothetical protein                          155   5e-38

>30185.m000928 conserved hypothetical protein
          Length = 690

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/475 (72%), Positives = 356/475 (74%), Gaps = 72/475 (15%)

Query: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYQTKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
           MSP+TETKASVGFKA VKDYKLTYYTP+Y+TKDTDILAAFRVTPQ               
Sbjct: 1   MSPKTETKASVGFKASVKDYKLTYYTPKYETKDTDILAAFRVTPQPGVPPEEVGAAVAAE 60

Query: 61  SSTGTWTTVWTDGLTSLDRYKGRCYDIEPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120
           SST TWTTVWTDGLTSLD YKGRCY IEPVAGEENQ+IAYV YPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTSTWTTVWTDGLTSLDHYKGRCYHIEPVAGEENQFIAYVVYPLDLFEEGSVTNMFTSI 120

Query: 121 VGNVFGFKALRALRLEDLRIPTAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180
           VGN +G    + LR                   G+   +D  N   +P            
Sbjct: 121 VGNNYGRAVYKCLR------------------GGLDFTKDDENVNSQP------------ 150

Query: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL 240
                                         FMRWRDRFLF AEAIYKAQAET        
Sbjct: 151 ------------------------------FMRWRDRFLFYAEAIYKAQAET-------- 172

Query: 241 NATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAV 300
               GTCEEMIKR VFARE GVPIVMHDYLTGGFTANT+L HYCRDNGLLLHIHRAMHAV
Sbjct: 173 ----GTCEEMIKRVVFARESGVPIVMHDYLTGGFTANTTLVHYCRDNGLLLHIHRAMHAV 228

Query: 301 IDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSR 360
           IDRQKNH MHFRVLAKALR+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSR
Sbjct: 229 IDRQKNHSMHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSR 288

Query: 361 GIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420
           GIYFTQDWVSLPGVLPVAS GIHVWHMPAL EIFGDDSVLQFGGGTLGHPWGNAPGAVAN
Sbjct: 289 GIYFTQDWVSLPGVLPVASRGIHVWHMPALIEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 348

Query: 421 RVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 475
           RVALEACVQARNEGRDLAREGNEIIRE  KWSPELAA CEVWKEIKFEF AMDT 
Sbjct: 349 RVALEACVQARNEGRDLAREGNEIIREVGKWSPELAATCEVWKEIKFEFPAMDTF 403


>29923.m000793 conserved hypothetical protein
          Length = 364

 Score =  617 bits (1592), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 322/475 (67%), Positives = 332/475 (69%), Gaps = 111/475 (23%)

Query: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYQTKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
           MSPQTETKASVGFKAGVKDYKLTYYTPEY+TKDT+IL AFRVTPQ               
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTNILVAFRVTPQPGVPLEEARATVAVE 60

Query: 61  SSTGTWTTVWTDGLTSLDRYKGRCYDIEPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120
           SSTGTWTT+WTDGLTSLDRYKGRCY IEPVAGEENQ+IAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61  SSTGTWTTMWTDGLTSLDRYKGRCYHIEPVAGEENQFIAYVAYPLDLFEEGSVTNMFTSI 120

Query: 121 VGNVFGFKALRALRLEDLRIPTAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180
           VG                            PPHGIQVERDKLNKYG PLL CTIKPKLGL
Sbjct: 121 VG----------------------------PPHGIQVERDKLNKYGCPLLDCTIKPKLGL 152

Query: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL 240
           SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMR                           
Sbjct: 153 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMR--------------------------- 185

Query: 241 NATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAV 300
                TCE+M+KRAVFARELGVPIVMHDYLTGGFTANT+LAHYCRDNGLLLHIHRAMHAV
Sbjct: 186 -----TCEKMLKRAVFARELGVPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIHRAMHAV 240

Query: 301 IDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSR 360
           IDRQKNHGMHF VLAK L +S GDHIHAGTVV                        DR R
Sbjct: 241 IDRQKNHGMHFHVLAKVLHMSSGDHIHAGTVV------------------------DRIR 276

Query: 361 GIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420
           GIYFTQDWVSLPGVLPVASG                           GHPWGNAPG VAN
Sbjct: 277 GIYFTQDWVSLPGVLPVASG---------------------------GHPWGNAPGVVAN 309

Query: 421 RVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 475
           RVALEACVQARNEG DLAREGNEII E  KWSPELAAACE+WKEI F+F  MDTL
Sbjct: 310 RVALEACVQARNEGHDLAREGNEIICEVGKWSPELAAACEIWKEITFDFPTMDTL 364


>30063.m001449 Ribulose bisphosphate carboxylase large chain
           precursor, putative
          Length = 234

 Score =  437 bits (1123), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/232 (91%), Positives = 214/232 (92%)

Query: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYQTKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
           MSPQTETKASVGFKAGVKDYKLTYYTPEY+TKDTDILAAFRVTPQ               
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 61  SSTGTWTTVWTDGLTSLDRYKGRCYDIEPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120
           SSTGTWTTVWTDGLTSLDRYKGRCY IEPVAGEENQ+IAYVAYPLDLFEEG VTNMFTSI
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEENQFIAYVAYPLDLFEEGFVTNMFTSI 120

Query: 121 VGNVFGFKALRALRLEDLRIPTAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180
           VGNVFGFKALRALRLEDLRIP AYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALRALRLEDLRIPPAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180

Query: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAET 232
           SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAET
Sbjct: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAET 232


>30184.m001172 conserved hypothetical protein
          Length = 245

 Score =  244 bits (622), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 131/168 (77%), Gaps = 17/168 (10%)

Query: 308 GMHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQD 367
           G+  +  AK LR+S  DHIH GTVVGKLEGERDITLGFVDL  DDFI+KDR R       
Sbjct: 95  GLSTKNYAKTLRMSSEDHIHTGTVVGKLEGERDITLGFVDLSHDDFIKKDRCR------- 147

Query: 368 WVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEAC 427
                     AS GIHV +MPALTEIFGDDSVLQF GGTLGHPWGNAPGA+ANRVALEAC
Sbjct: 148 ----------ASRGIHVLYMPALTEIFGDDSVLQFNGGTLGHPWGNAPGAIANRVALEAC 197

Query: 428 VQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 475
           VQARNEGRDLA EGNEIIRE  KW+ +LA ACEVWKEIKFEF AMDTL
Sbjct: 198 VQARNEGRDLAHEGNEIIREFGKWNRKLATACEVWKEIKFEFPAMDTL 245



 Score =  125 bits (314), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 61/71 (85%)

Query: 119 SIVGNVFGFKALRALRLEDLRIPTAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKL 178
           S   NVFGFK LRAL LEDLRIP AYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPK 
Sbjct: 35  SSTSNVFGFKVLRALCLEDLRIPPAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKP 94

Query: 179 GLSAKNYGRAV 189
           GLS KNY + +
Sbjct: 95  GLSTKNYAKTL 105


>29813.m001455 DNA-directed RNA polymerase beta chain, putative
          Length = 163

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/101 (85%), Positives = 92/101 (91%), Gaps = 2/101 (1%)

Query: 212 MRWRDRF--LFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDY 269
           +RW  +   LFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDY
Sbjct: 43  VRWVQKKGGLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDY 102

Query: 270 LTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMH 310
           LTGGFTANT+LAHYCRDNGLLLHIHRAMHAVID ++   +H
Sbjct: 103 LTGGFTANTTLAHYCRDNGLLLHIHRAMHAVIDSRQYLKVH 143


>30061.m000288 conserved hypothetical protein
          Length = 84

 Score =  155 bits (391), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/81 (88%), Positives = 74/81 (91%)

Query: 116 MFTSIVGNVFGFKALRALRLEDLRIPTAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 175
           MFTSI GNVFGFKALRAL LED+RIP AYTKTFQG PHGIQVERDK+NKYGRPLLGCTIK
Sbjct: 1   MFTSIAGNVFGFKALRALGLEDVRIPPAYTKTFQGLPHGIQVERDKMNKYGRPLLGCTIK 60

Query: 176 PKLGLSAKNYGRAVYECLRGG 196
           PKLGL AKNYGRA YECL GG
Sbjct: 61  PKLGLFAKNYGRAAYECLCGG 81