Jatropha Genome Database

JcCA0000182.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000182.20 + phase: 2 /TE
         (660 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29930.m000615 conserved hypothetical protein                           72   8e-13
59505.m000053 nuclease, putative                                       66   5e-11
29822.m003393 nuclease, putative                                       63   4e-10
44144.m000043 conserved hypothetical protein                           57   3e-08

>29930.m000615 conserved hypothetical protein
          Length = 97

 Score = 72.0 bits (175), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 6/101 (5%)

Query: 526 MEAVLPIELEKKSLRVFVEAGLTEEEWVKKRYEDLALLDGRRLNARFQDQMRKRRIARFY 585
           MEA+L +E+E  SLRV +EA + E +W + RYE L L+D     A +   + ++R AR  
Sbjct: 1   MEAILLVEVEINSLRVLIEAEIAEAKWGRDRYEQLKLIDETMTRAMYHTLLYQQRTARVS 60

Query: 586 NKRVHPRALKNGH*VLI--KLLDHEAQNNPGGKFKPNWHGP 624
           +K V PR LK G+ VL   KL+D +      GK +PN  GP
Sbjct: 61  DKHVKPRPLKKGNLVLKEGKLVDLDHL----GKLRPNSEGP 97


>59505.m000053 nuclease, putative
          Length = 262

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 2/129 (1%)

Query: 85  LYFDGSANRNG--AGASIVIEAPNGEVTIMCKRLLFPITNNMAEYEACIMGMEALLASGA 142
           L FDG++  N   AGA  ++   +G +    +  L  +TNN+AEY A I+GM+  L  G 
Sbjct: 123 LEFDGASKGNPGPAGAGALLRTTDGRIICRLREGLGQVTNNVAEYRAMILGMKYALKKGY 182

Query: 143 KEVEVIGDSLLVIEHANERWKVEEERLKPYVEYLLKKAALFDKITFTHIGRIHNRIPNAL 202
            ++ V GDS LV       WKV+ + +    E   +    F     +H+ R  N   +A 
Sbjct: 183 TKIRVQGDSKLVCSQVQGLWKVKHKDMTNLYEQAKQLKDKFASFQISHVLRALNSEADAQ 242

Query: 203 ANLASAWQD 211
           ANLA    D
Sbjct: 243 ANLAIQLAD 251


>29822.m003393 nuclease, putative
          Length = 255

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 85  LYFDGSA--NRNGAGASIVIEAPNGEVTIMCKRLLFPITNNMAEYEACIMGMEALLASGA 142
           L FDG++  N   AGA  V+ A +G +  + +  L   TNN+AEY A I+G++  L  G 
Sbjct: 117 LEFDGASKGNPGPAGAGAVLRAEDGSMVCLLREGLGTATNNVAEYRAVILGLKHALRKGF 176

Query: 143 KEVEVIGDSLLVIEHANERWKVEEERLKPYVEYLLKKAALFDKITFTHIGRIHNRIPNAL 202
           K + V GDS LV+      WK++ + +    +   +    F      H+ R  N   +  
Sbjct: 177 KHIRVRGDSNLVVMQIKGLWKIKSQNVADLCKEAKELKNKFLSFQIEHVLREFNSEADTQ 236

Query: 203 ANLASAWQD 211
           ANLA   +D
Sbjct: 237 ANLAVNLKD 245


>44144.m000043 conserved hypothetical protein
          Length = 118

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 313 VCGTHLSGMSLARKVMRQGYFWMQMEGDCVNYVRHCKACQYHDNKSHLPAVELRPTAPSW 372
           VCG H SG  +  K+ + GY+W  M  +C++YV+ C  CQ H +    P   LRPT  SW
Sbjct: 56  VCGAHRSGPKMRVKLKQMGYYWPIMVQNCMDYVKRCNICQIHGDSMPNP---LRPTVASW 112

Query: 373 PF 374
           P 
Sbjct: 113 PI 114