Jatropha Genome Database

JcCA0000051.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000051.40 - phase: 0 /partial
         (176 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004740 50S ribosomal protein L2, putative                      202   9e-53
29949.m000118 50S ribosomal protein L2, putative                      127   4e-30
30156.m001699 60S ribosomal protein L8, putative                       75   1e-14
29743.m000298 60S ribosomal protein L8, putative                       75   2e-14

>29929.m004740 50S ribosomal protein L2, putative
          Length = 111

 Score =  202 bits (513), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 100/104 (96%), Positives = 101/104 (97%)

Query: 1   ISSSTPRKPYALEEACTVWEEVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGA 60
           ISSSTPRKPYALEEACTVWEE+LIDQKEESTSTDMPLGTAIHNIEIT GKGGQLARAA A
Sbjct: 5   ISSSTPRKPYALEEACTVWEEILIDQKEESTSTDMPLGTAIHNIEITFGKGGQLARAASA 64

Query: 61  VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNTGVNQKS 104
           VAKLIAKEGKSATLKLPS EVRLISKNCSATVGQVGNTGVNQKS
Sbjct: 65  VAKLIAKEGKSATLKLPSEEVRLISKNCSATVGQVGNTGVNQKS 108


>29949.m000118 50S ribosomal protein L2, putative
          Length = 241

 Score =  127 bits (318), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 93/149 (62%), Gaps = 7/149 (4%)

Query: 34  DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK-EGKSATLKLPSGEVRLISKNCSATV 92
            M +GT IHNIE+  G+GG+L RAAG  AK++ +   K   +KLPSG  +LI   C AT+
Sbjct: 80  SMRIGTFIHNIEVNPGQGGKLVRAAGTCAKIMKEPTEKHCLVKLPSGVEKLIDSRCRATI 139

Query: 93  GQVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRA----PIGRKKPAT 148
           G+V N   + + L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+      GR    T
Sbjct: 140 GRVSNPSHSTRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGSFGRVS-QT 198

Query: 149 PWGYPA-LGRRSRKRNKYSDNLILRRRTK 176
           PWG P   GR   K+      L+L +++K
Sbjct: 199 PWGKPTKCGRNQEKKRTGKFGLLLPQKSK 227


>30156.m001699 60S ribosomal protein L8, putative
          Length = 261

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 15/113 (13%)

Query: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 92
           +P G  + N+E  +G  G  AR +G  A +I+    + T  +KLPSG  +++   C A V
Sbjct: 107 IPEGAVVCNVEHHVGDRGSFARCSGDYAIVISHNPDNGTTRIKLPSGAKKIVPSGCRAMV 166

Query: 93  GQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 136
           GQV   G  +K + +AG+          CW    P VRGV MNPV+HPHGGG 
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKYRVKRNCW----PKVRGVAMNPVEHPHGGGN 215


>29743.m000298 60S ribosomal protein L8, putative
          Length = 261

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 15/113 (13%)

Query: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATV 92
           +P G  + N+E  +G  G  AR +G  A +I+    + T  +KLPSG  +++   C A V
Sbjct: 107 IPEGAVVCNVEHHVGDRGAFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMV 166

Query: 93  GQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 136
           GQV   G  +K + +AG+          CW    P VRGV MNPV+HPHGGG 
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKYRVKRNCW----PKVRGVAMNPVEHPHGGGN 215