Jatropha Genome Database

JcCA0000041.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000041.30 + phase: 0 
         (493 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28890.m000006 β-carboxyltransferase (β-CT) subunit of ...   550   e-157
30185.m000928 conserved hypothetical protein                          427   e-120
29917.m001954 conserved hypothetical protein                          123   3e-28

>28890.m000006 β-carboxyltransferase (β-CT) subunit of
           Het-ACCase
          Length = 274

 Score =  550 bits (1416), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/269 (97%), Positives = 265/269 (98%)

Query: 222 HLWVQCENCYGLNYKKFLKSRMNICEQCGYHLKMSSSDRIELSIDLGTWNPMDEDMVSLD 281
           HLWVQCENCYGLNYKKF KSRMNICEQCGYHLKMSSSDRIELSIDLGTW+PMDEDMVSLD
Sbjct: 6   HLWVQCENCYGLNYKKFFKSRMNICEQCGYHLKMSSSDRIELSIDLGTWDPMDEDMVSLD 65

Query: 282 PIEFHSEEEPYKDRIDSYQKKTGLTEAVQTGTGQLNGIPVAIGVMDFQFMGGSMGSVVGE 341
           PIEFHSEEEPYKDRIDSYQ+KTGLTEAVQTGTGQLNGIPVAIGVMDFQFMGGSMGSVVGE
Sbjct: 66  PIEFHSEEEPYKDRIDSYQRKTGLTEAVQTGTGQLNGIPVAIGVMDFQFMGGSMGSVVGE 125

Query: 342 KITRLIEYATNKFLPLILVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYVSILT 401
           KITRLIEYATNKFLPLILVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYVSILT
Sbjct: 126 KITRLIEYATNKFLPLILVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYVSILT 185

Query: 402 SPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKTVPEGSQSAEFLFHKGLFDP 461
           SPT GGVTA+FGMLGDIIIAEPNAYIAF GKRVIEQTLNKTVPEGSQSAEFLFHKGLFD 
Sbjct: 186 SPTIGGVTANFGMLGDIIIAEPNAYIAFVGKRVIEQTLNKTVPEGSQSAEFLFHKGLFDS 245

Query: 462 IVPRNPLKGVLNELLQLHDFFPLNHKSSR 490
           IVPRNPLKGVLNELLQLHDFFPLNHKSSR
Sbjct: 246 IVPRNPLKGVLNELLQLHDFFPLNHKSSR 274


>30185.m000928 conserved hypothetical protein
          Length = 690

 Score =  427 bits (1097), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/350 (65%), Positives = 235/350 (67%), Gaps = 69/350 (19%)

Query: 146 WNNYINSCIDNYLRSQICID---LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 202
           W NYINSCI +YLRSQ+CID   L                                    
Sbjct: 404 WKNYINSCIGSYLRSQVCIDSYILTGSYNYSESSIYSYICGESGNSNESQSSSLRTSTNG 463

Query: 203 XDLTIRESSNDLDIT--QKYKHLWVQCENCYGLNYKKFLKSRMNICEQCGYHLKMSSSDR 260
            DLT RESSNDLDIT  QKYKHLWVQCENCYGLNYKKF KSRMNICEQCGYHLKMSSSDR
Sbjct: 464 SDLTRRESSNDLDITITQKYKHLWVQCENCYGLNYKKFFKSRMNICEQCGYHLKMSSSDR 523

Query: 261 IELSIDLGTWNPMDEDMVSLDPIEFHSEEEPYKDRIDSYQKKTGLTEAVQTGTGQLNGIP 320
           IELSIDLGTW+PMDEDMVSLDPIEFHSEEEPYKDRIDSYQ+KTGLTEA++TGT       
Sbjct: 524 IELSIDLGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIETGT------- 576

Query: 321 VAIGVMDFQFMGGSMGSVVGEKITRLIEYATNKFLPLILVCASGGARMQEGSLSLMQMAK 380
                                                  VC SGG RMQEGSLSLMQMAK
Sbjct: 577 ---------------------------------------VCLSGGVRMQEGSLSLMQMAK 597

Query: 381 ISSALYDYQSNKKLFYVSILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLN 440
           ISSALYDYQSNKKLFYVSILTSPTTG VT SF                  GKRVIEQTLN
Sbjct: 598 ISSALYDYQSNKKLFYVSILTSPTTGEVTTSF------------------GKRVIEQTLN 639

Query: 441 KTVPEGSQSAEFLFHKGLFDPIVPRNPLKGVLNELLQLHDFFPLNHKSSR 490
           KTVPEGSQSAEFLF+KGLFD IVPRNPLKGVLNELLQLHDFFPLNHKSSR
Sbjct: 640 KTVPEGSQSAEFLFYKGLFDSIVPRNPLKGVLNELLQLHDFFPLNHKSSR 689


>29917.m001954 conserved hypothetical protein
          Length = 111

 Score =  123 bits (308), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/87 (72%), Positives = 66/87 (75%)

Query: 335 MGSVVGEKITRLIEYATNKFLPLILVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKL 394
           +G + G  ITR            I VCASGG RMQEGSLS+MQMAKISS LYD QSNKKL
Sbjct: 17  IGEIEGTCITRAQSEKIPHEFSTIAVCASGGVRMQEGSLSVMQMAKISSTLYDSQSNKKL 76

Query: 395 FYVSILTSPTTGGVTASFGMLGDIIIA 421
           FYVSILT PTTGGVTASFGMLGDIIIA
Sbjct: 77  FYVSILTPPTTGGVTASFGMLGDIIIA 103