Jatropha Genome Database

JHL02J17r.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JHL02J17r.10 + phase: 2 /partial/short
         (40 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30072.m000942 replication factor C / DNA polymerase III gamma-ta...    49   6e-07

>30072.m000942 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 342

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/27 (81%), Positives = 26/27 (96%)

Query: 1   SSKVSEAIRSRCLNMRINAPSEEQVRK 27
           SSKV+EAIRSRCLN+RI+APSEEQ+ K
Sbjct: 171 SSKVTEAIRSRCLNVRISAPSEEQIVK 197