Jatropha Genome Database

JcPR04JCLS5.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR04JCLS5.10 + phase: 1 /pseudo/partial
         (124 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19835.1 | Symbols:  | unknown protein | chr1:6856212-6859513...   120   3e-28
AT1G47900.1 | Symbols:  | unknown protein | chr1:17647340-176510...    93   4e-20
AT4G36120.1 | Symbols:  | unknown protein | chr4:17093213-170965...    59   5e-10

>AT1G19835.1 | Symbols:  | unknown protein | chr1:6856212-6859513
           REVERSE
          Length = 982

 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/114 (57%), Positives = 78/114 (68%), Gaps = 5/114 (4%)

Query: 1   EINSPDCIDKVALPENKVLQRDCSGERYQNGCAHISSPTSNPEVPDDGNLVSGYGSNTTL 60
           EI+SPDCIDKVALPENK LQ+D SGE YQNGC    S +S+ E+PDD N  SGY      
Sbjct: 668 EIHSPDCIDKVALPENKALQKDSSGEHYQNGC----SQSSDSEIPDDCNGTSGYEPKLAT 723

Query: 61  CKVSLEEFEELKTEKDNMAMDLARCTENLEMTKSQLHETEQLLARSLKLQLTSA 114
           CK + EEFE LK EK+    +LA C  +LE TK++L ETE+LLA  +K  L SA
Sbjct: 724 CKFTTEEFEGLKLEKEKAESNLASCEADLEATKTKLQETEKLLAE-VKSDLESA 776


>AT1G47900.1 | Symbols:  | unknown protein | chr1:17647340-17651035
           REVERSE
          Length = 1054

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 18/111 (16%)

Query: 4   SPDCIDKVALPENKVLQRDCSGERYQNGCAHISSPTSNPEVPDDGNLVSGYGSNTTLCKV 63
           SPDCIDKVALPE+KV+ +D S E YQNGC H     + P VP D N VSGY S++     
Sbjct: 742 SPDCIDKVALPESKVVDKDSSQEIYQNGCVH-----NEPGVPCDENRVSGYESDSK---- 792

Query: 64  SLEEFEELKTEKDNMAMDLARCTENLEMTKSQLHETEQLLARSLKLQLTSA 114
            L+E EEL++EK+ MA+D       +E  K QL E+EQLLA  ++ Q  SA
Sbjct: 793 -LQEIEELRSEKEKMAVD-------IEGLKCQLQESEQLLA-DIRSQFDSA 834


>AT4G36120.1 | Symbols:  | unknown protein | chr4:17093213-17096573
           REVERSE
          Length = 996

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 53/70 (75%), Gaps = 4/70 (5%)

Query: 49  NLVSGYGSNTTLCKVSLEEFEELKTEKDNMAMDLARCTENLEMTKSQLHETEQLLARSLK 108
           NL++G  S+   CK  L+E E+LK EK+N+A++L+RC +NLE TK+ L E EQL+++ LK
Sbjct: 731 NLINGDDSS---CKSLLKEVEQLKLEKENIAVELSRCLQNLESTKAWLEEKEQLISK-LK 786

Query: 109 LQLTSATEVK 118
            QLTS+ +++
Sbjct: 787 SQLTSSEDLQ 796