Jatropha Genome Database

JcPR04F24VT.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR04F24VT.10 + phase: 0 /partial
         (80 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41880.1 | Symbols: POLA3, POLA4 | POLA3; DNA primase | chr5:...    94   2e-20

>AT5G41880.1 | Symbols: POLA3, POLA4 | POLA3; DNA primase |
          chr5:16761117-16764074 FORWARD
          Length = 437

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 49/59 (83%)

Query: 7  DGKHPACDKSYFGRREFSFTLDNDIYLRFQSFNNESELENSIKEKCPFKIDIGPVYSVD 65
          DGKHP CD+ YFGRREFSFTL+ND+YLR++SF N S +E +IK   P+KIDIG VYSVD
Sbjct: 39 DGKHPGCDEYYFGRREFSFTLENDVYLRYKSFKNASLMEAAIKSNFPYKIDIGAVYSVD 97