Jatropha Genome Database

JcPR03EVQAR.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03EVQAR.10 + phase: 0 /partial/short
         (46 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60740.1 | Symbols: TTN1, EMB133, TFC D, CHO | TTN1 (TITAN 1)...    58   1e-09

>AT3G60740.1 | Symbols: TTN1, EMB133, TFC D, CHO | TTN1 (TITAN 1);
           tubulin binding | chr3:22447385-22453325 REVERSE
          Length = 1254

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query: 6   FFSFIEWTHEVLSSGTDDVMSHFRLLGVVEALAAIFK 42
           F SF EWT+EVLS   D V +HFRLLGV+EAL+AIFK
Sbjct: 253 FSSFFEWTYEVLSCKEDSVTNHFRLLGVMEALSAIFK 289