Jatropha Genome Database

JcPR03AHRQV.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03AHRQV.10 - phase: 0 /partial
         (73 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G62990.1 | Symbols: KNAT7, IXR11 | KNAT7 (KNOTTED-LIKE HOMEOB...    91   2e-19
AT5G25220.1 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GEN...    75   1e-14
AT5G25220.2 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GEN...    74   2e-14
AT5G11060.1 | Symbols: KNAT4 | KNAT4 (KNOTTED1-LIKE HOMEOBOX GEN...    71   1e-13
AT4G32040.1 | Symbols: KNAT5 | KNAT5 (KNOTTED1-LIKE HOMEOBOX GEN...    68   1e-12

>AT1G62990.1 | Symbols: KNAT7, IXR11 | KNAT7 (KNOTTED-LIKE
          HOMEOBOX OF ARABIDOPSIS THALIANA 7); DNA binding /
          transcription activator/ transcription factor |
          chr1:23337468-23340348 FORWARD
          Length = 291

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 46/48 (95%)

Query: 26 DQTRQLKADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSHH 73
          +Q RQLK +IATHP+YEQLLAAHV+CLRVATPIDQLP+I+AQLSQSHH
Sbjct: 24 EQNRQLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHH 71


>AT5G25220.1 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE
           3); transcription activator/ transcription factor |
           chr5:8736208-8738115 FORWARD
          Length = 431

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 41/47 (87%)

Query: 27  QTRQLKADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSHH 73
           Q  + KA+I +HPLYEQLL+AHV+CLR+ATP+DQLP IDAQL+QS H
Sbjct: 155 QNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQH 201


>AT5G25220.2 | Symbols: KNAT3 | KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE
           3); transcription activator/ transcription factor |
           chr5:8736208-8738087 FORWARD
          Length = 419

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 41/47 (87%)

Query: 27  QTRQLKADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSHH 73
           Q  + KA+I +HPLYEQLL+AHV+CLR+ATP+DQLP IDAQL+QS H
Sbjct: 155 QNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQH 201


>AT5G11060.1 | Symbols: KNAT4 | KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE
           4); transcription activator/ transcription factor |
           chr5:3510408-3512967 FORWARD
          Length = 393

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 41/47 (87%)

Query: 27  QTRQLKADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSHH 73
           Q  + KA+I +HPLYEQLL+AHV+CLR+ATP+DQLP IDAQL+QS +
Sbjct: 119 QNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQN 165


>AT4G32040.1 | Symbols: KNAT5 | KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE
           5); transcription activator/ transcription factor |
           chr4:15494127-15496009 FORWARD
          Length = 383

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 36/41 (87%)

Query: 32  KADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSH 72
           KA I  HP+YEQLLAAHV+CLRVATP+DQ+P IDAQLSQ H
Sbjct: 119 KAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLH 159