Jatropha Genome Database

JcPR02IGLIS.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02IGLIS.10 + phase: 0 /pseudo/partial
         (164 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63400.1 | Symbols:  | peptidyl-prolyl cis-trans isomerase cy...    57   7e-09

>AT3G63400.1 | Symbols:  | peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein | chr3:23412449-23415435
           FORWARD
          Length = 570

 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 30/33 (90%)

Query: 89  RSRSPNGTPQRVRKGRGFTERYSFARRYRTPSP 121
           RS SP+G P+R+RKGRGFTERYSFAR+Y TPSP
Sbjct: 402 RSPSPSGVPKRIRKGRGFTERYSFARKYHTPSP 434