Jatropha Genome Database

JcPR02GC7KU.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02GC7KU.10 + phase: 1 /pseudo/partial
         (55 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45190.1 | Symbols: AFO, FIL, YAB1 | AFO (ABNORMAL FLORAL ORG...    65   6e-12
AT2G26580.2 | Symbols: YAB5 | YAB5 (YABBY5); transcription facto...    65   1e-11
AT2G26580.1 | Symbols: YAB5 | YAB5 (YABBY5); transcription facto...    65   1e-11
AT4G00180.2 | Symbols: YAB3 | YAB3 (YABBY3); protein binding / t...    64   2e-11
AT1G08465.1 | Symbols: YAB2 | YAB2 (YABBY2); transcription facto...    63   3e-11
AT4G00180.1 | Symbols: YAB3 | YAB3 (YABBY3); protein binding / t...    63   4e-11
AT1G69180.1 | Symbols: CRC | CRC (CRABS CLAW); transcription fac...    56   5e-09
AT1G23420.1 | Symbols: INO | INO (INNER NO OUTER); protein bindi...    54   2e-08

>AT2G45190.1 | Symbols: AFO, FIL, YAB1 | AFO (ABNORMAL FLORAL
           ORGANS); protein binding / transcription factor/
           transcription regulator | chr2:18628450-18630552 REVERSE
          Length = 229

 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 38/49 (77%), Gaps = 1/49 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           PEKRQRVPSAYNRFIKEE  +RIKA NPDISHREAF  ++K      HI
Sbjct: 138 PEKRQRVPSAYNRFIKEE-IQRIKAGNPDISHREAFSAAAKNWAHFPHI 185


>AT2G26580.2 | Symbols: YAB5 | YAB5 (YABBY5); transcription factor |
           chr2:11303923-11306739 REVERSE
          Length = 164

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           PEKRQRVPSAYN+FIKEE  +RIKA+NPDISHREAF  ++K      HI
Sbjct: 102 PEKRQRVPSAYNQFIKEE-IQRIKANNPDISHREAFSTAAKNWAHFPHI 149


>AT2G26580.1 | Symbols: YAB5 | YAB5 (YABBY5); transcription factor |
           chr2:11303923-11306739 REVERSE
          Length = 164

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           PEKRQRVPSAYN+FIKEE  +RIKA+NPDISHREAF  ++K      HI
Sbjct: 102 PEKRQRVPSAYNQFIKEE-IQRIKANNPDISHREAFSTAAKNWAHFPHI 149


>AT4G00180.2 | Symbols: YAB3 | YAB3 (YABBY3); protein binding /
           transcription factor | chr4:72804-74888 REVERSE
          Length = 209

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 37/48 (77%), Gaps = 1/48 (2%)

Query: 2   EKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           EKRQRVPSAYNRFIKEE  +RIKA NPDISHREAF  ++K      HI
Sbjct: 120 EKRQRVPSAYNRFIKEE-IQRIKAGNPDISHREAFSAAAKNWAHFPHI 166


>AT1G08465.1 | Symbols: YAB2 | YAB2 (YABBY2); transcription factor |
           chr1:2676033-2679382 FORWARD
          Length = 184

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 38/49 (77%), Gaps = 1/49 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           PEKRQRVPSAYNRFIKEE  +RIKA NP+ISHREAF  ++K      HI
Sbjct: 109 PEKRQRVPSAYNRFIKEE-IQRIKACNPEISHREAFSTAAKNWAHFPHI 156


>AT4G00180.1 | Symbols: YAB3 | YAB3 (YABBY3); protein binding /
           transcription factor | chr4:72804-75089 REVERSE
          Length = 240

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 37/48 (77%), Gaps = 1/48 (2%)

Query: 2   EKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSKKCKFHFHI 49
           EKRQRVPSAYNRFIKEE  +RIKA NPDISHREAF  ++K      HI
Sbjct: 151 EKRQRVPSAYNRFIKEE-IQRIKAGNPDISHREAFSAAAKNWAHFPHI 197


>AT1G69180.1 | Symbols: CRC | CRC (CRABS CLAW); transcription factor
           | chr1:26007734-26008940 REVERSE
          Length = 181

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/41 (60%), Positives = 36/41 (87%), Gaps = 1/41 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSK 41
           PEK+QR+PSAYNRF+++E  +RIK++NP+I HREAF  ++K
Sbjct: 112 PEKKQRLPSAYNRFMRDE-IQRIKSANPEIPHREAFSAAAK 151


>AT1G23420.1 | Symbols: INO | INO (INNER NO OUTER); protein binding
           / transcription factor | chr1:8317423-8319104 FORWARD
          Length = 231

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%), Gaps = 1/41 (2%)

Query: 1   PEKRQRVPSAYNRFIKEENFKRIKASNPDISHREAF*YSSK 41
           PEKRQR PSAYN FIKEE  +R+KA NP ++H+EAF  ++K
Sbjct: 132 PEKRQRAPSAYNCFIKEE-IRRLKAQNPSMAHKEAFSLAAK 171