Jatropha Genome Database

JcPR02FRRM3.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02FRRM3.10 - phase: 1 /pseudo/partial
         (56 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42740.1 | Symbols:  | glucose-6-phosphate isomerase, cytosol...    67   2e-12

>AT5G42740.1 | Symbols:  | glucose-6-phosphate isomerase, cytosolic
           (PGIC) | chr5:17136080-17140622 FORWARD
          Length = 560

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/30 (96%), Positives = 30/30 (100%)

Query: 4   VSTNLSLVEKFGIDPNNAFAFWDWVGGRYS 33
           VSTNL+LVEKFGIDPNNAFAFWDWVGGRYS
Sbjct: 248 VSTNLALVEKFGIDPNNAFAFWDWVGGRYS 277