Jatropha Genome Database

JcPR01C6D2I.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR01C6D2I.10 + phase: 0 /pseudo/partial
         (103 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22200.1 | Symbols: POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL ...    86   4e-18

>AT3G22200.1 | Symbols: POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL
           INCOMPATIBILITY 2); 4-aminobutyrate transaminase/
           4-aminobutyrate:pyruvate transaminase |
           chr3:7835286-7838863 FORWARD
          Length = 504

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/43 (83%), Positives = 42/43 (97%)

Query: 31  VICAFGRLGTMFGCDKYNIKPDLVSVAKALSSAYLPIGGVMVS 73
           VICAFGRLGTMFGCDKYNIKPDLV++AKALSSAY+PIG +++S
Sbjct: 300 VICAFGRLGTMFGCDKYNIKPDLVTLAKALSSAYMPIGAILMS 342