Jatropha Genome Database
- JcPR01BVAYK.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcPR01BVAYK.10 + phase: 0 /partial
(64 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G55850.1 | Symbols: NOI | NOI | chr5:22603617-22604951 FORWARD 85 9e-18
AT5G55850.2 | Symbols: NOI | NOI | chr5:22603617-22604951 FORWARD 84 2e-17
AT2G04410.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 83 3e-17
AT5G40645.1 | Symbols: | nitrate-responsive NOI protein, putati... 69 8e-13
AT4G35655.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 63 4e-11
AT5G63270.1 | Symbols: | nitrate-responsive NOI protein, putati... 62 6e-11
AT3G48450.1 | Symbols: | nitrate-responsive NOI protein, putati... 60 3e-10
AT2G17660.1 | Symbols: | nitrate-responsive NOI protein, putati... 59 5e-10
AT3G25070.1 | Symbols: RIN4 | RIN4 (RPM1 INTERACTING PROTEIN 4);... 50 3e-07
>AT5G55850.1 | Symbols: NOI | NOI | chr5:22603617-22604951 FORWARD
Length = 114
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 1 QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPARDN-SSFKPGSNTLGKPQS 59
+PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGGKP SP + + K G KPQ
Sbjct: 6 RPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSKPQP 65
Query: 60 VSEV 63
V ++
Sbjct: 66 VKKM 69
>AT5G55850.2 | Symbols: NOI | NOI | chr5:22603617-22604951 FORWARD
Length = 130
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 1 QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPARDNS-SFKPGSNTLGKPQS 59
+PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGGKP SP + + K G KPQ
Sbjct: 22 RPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSKPQP 81
Query: 60 VSEV 63
V ++
Sbjct: 82 VKKM 85
>AT2G04410.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Defence response, Rin4
(InterPro:IPR008700); BEST Arabidopsis thaliana protein
match is: NOI (TAIR:AT5G55850.1); Has 141 Blast hits to
140 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0;
Other Eukaryotes - 2 (source: NCBI BLink). |
chr2:1534012-1535040 REVERSE
Length = 73
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 44/57 (77%)
Query: 1 QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGKPDSPARDNSSFKPGSNTLGKP 57
+PLPKFGEWDVNDP+SAEGFTVIFNKARNEKK GGK DSP +D + L KP
Sbjct: 6 RPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLEKP 62
>AT5G40645.1 | Symbols: | nitrate-responsive NOI protein,
putative | chr5:16280410-16280883 REVERSE
Length = 73
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 39/47 (82%), Gaps = 2/47 (4%)
Query: 1 QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKT--GGKPDSPARDNS 45
+PLPKFGEWDVNDPASAEGFTVIF KAR++KKT G+ S RDN+
Sbjct: 13 RPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNN 59
>AT4G35655.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; CONTAINS
InterPro DOMAIN/s: Defence response, Rin4
(InterPro:IPR008700); BEST Arabidopsis thaliana protein
match is: nitrate-responsive NOI protein, putative
(TAIR:AT2G17660.1); Has 135 Blast hits to 134 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:16910755-16910961
FORWARD
Length = 68
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 1 QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTG 34
+PLPKFGEWDVNDPA+AEGFTVIF+KA +KKTG
Sbjct: 8 RPLPKFGEWDVNDPATAEGFTVIFSKAGEDKKTG 41
>AT5G63270.1 | Symbols: | nitrate-responsive NOI protein,
putative | chr5:25365498-25365949 REVERSE
Length = 80
Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 41/53 (77%), Gaps = 7/53 (13%)
Query: 1 QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKT----GGKPD---SPARDNSS 46
+PLPKFGEWDVN+PASAEGFTVIF+KA +EKKT G P+ SP R+ +S
Sbjct: 7 KPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNS 59
>AT3G48450.1 | Symbols: | nitrate-responsive NOI protein,
putative | chr3:17944232-17944788 REVERSE
Length = 89
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 30/33 (90%)
Query: 1 QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKT 33
+PLPKFGEWD +P SAEGFTVIFNKAR++KKT
Sbjct: 8 RPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40
>AT2G17660.1 | Symbols: | nitrate-responsive NOI protein,
putative | chr2:7673359-7673568 FORWARD
Length = 69
Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 1 QPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTG 34
+ LPKFGEWDVNDPA+A+GFTVIF+KA +KKTG
Sbjct: 8 RALPKFGEWDVNDPATADGFTVIFSKAGEDKKTG 41
>AT3G25070.1 | Symbols: RIN4 | RIN4 (RPM1 INTERACTING PROTEIN 4);
protein binding | chr3:9132458-9133747 FORWARD
Length = 211
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 3 LPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG 35
+PKFG+WD N+P+SA+G+T IFNK R E+ +G
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGA 180