Jatropha Genome Database

JcCD0179138.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0179138.10 + phase: 1 /pseudo/partial
         (194 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50480.1 | Symbols: THFS | THFS (10-FORMYLTETRAHYDROFOLATE SY...   234   2e-62

>AT1G50480.1 | Symbols: THFS | THFS (10-FORMYLTETRAHYDROFOLATE
           SYNTHETASE); ATP binding / copper ion binding /
           formate-tetrahydrofolate ligase | chr1:18702064-18704687
           FORWARD
          Length = 634

 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 121/138 (87%)

Query: 14  GPGGFVVTEAGFGADIGTEKFMNIKCRYSGLMPQCAIIVATIRALKMHGGGPEVVAGRPL 73
           GPGGFVVTEAGFG+DIGTEKFMNIKCRYSGL PQCAI+VAT+RALKMHGGGP+VVAGRPL
Sbjct: 359 GPGGFVVTEAGFGSDIGTEKFMNIKCRYSGLTPQCAIVVATVRALKMHGGGPDVVAGRPL 418

Query: 74  DHAYTTENVPLVEAGCVNLARHISNTKSYGVNVVVAVNMFSTDTEAELSAVKNXXXXXXX 133
           D AY +ENV LVEAGCVNLA+HISNTK+YGVNV+VAVNMF+TDTEAEL+AV+        
Sbjct: 419 DRAYVSENVSLVEAGCVNLAKHISNTKAYGVNVIVAVNMFATDTEAELNAVRKFSMDAGA 478

Query: 134 XXXVVCTHHAHGGKGAVS 151
              VVC+HHAH GKGAV 
Sbjct: 479 FDAVVCSHHAHSGKGAVD 496