Jatropha Genome Database

JcCD0162764.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0162764.10 + phase: 1 /partial/short
         (47 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22200.2 | Symbols:  | unknown protein | chr1:7838104-7840602...    82   9e-17
AT1G22200.1 | Symbols:  | unknown protein | chr1:7837857-7840602...    82   9e-17
AT1G36050.2 | Symbols:  | unknown protein | chr1:13450467-134530...    80   2e-16
AT1G36050.1 | Symbols:  | unknown protein | chr1:13450467-134536...    80   2e-16

>AT1G22200.2 | Symbols:  | unknown protein | chr1:7838104-7840602
          REVERSE
          Length = 338

 Score = 81.6 bits (200), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/47 (78%), Positives = 43/47 (91%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M G+M++LR+LDAYPKINEDFY RT SGGVIT+ASSIVML+LF SEL
Sbjct: 1  MVGVMNRLRNLDAYPKINEDFYRRTLSGGVITLASSIVMLILFFSEL 47


>AT1G22200.1 | Symbols:  | unknown protein | chr1:7837857-7840602
          REVERSE
          Length = 386

 Score = 81.6 bits (200), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/47 (78%), Positives = 43/47 (91%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M G+M++LR+LDAYPKINEDFY RT SGGVIT+ASSIVML+LF SEL
Sbjct: 1  MVGVMNRLRNLDAYPKINEDFYRRTLSGGVITLASSIVMLILFFSEL 47


>AT1G36050.2 | Symbols:  | unknown protein |
          chr1:13450467-13453055 FORWARD
          Length = 386

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/47 (76%), Positives = 42/47 (89%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M G+++KLR+LDAYPKINEDFYSRT SGGVIT+ SS+VM LLF SEL
Sbjct: 1  MAGILNKLRNLDAYPKINEDFYSRTLSGGVITLLSSVVMFLLFFSEL 47


>AT1G36050.1 | Symbols:  | unknown protein |
          chr1:13450467-13453683 FORWARD
          Length = 489

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/47 (76%), Positives = 42/47 (89%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M G+++KLR+LDAYPKINEDFYSRT SGGVIT+ SS+VM LLF SEL
Sbjct: 1  MAGILNKLRNLDAYPKINEDFYSRTLSGGVITLLSSVVMFLLFFSEL 47