Jatropha Genome Database

JcCD0139939.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0139939.10 - phase: 0 /partial
         (56 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12120.2 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2); de...    81   1e-16
AT3G12120.1 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2); de...    81   1e-16
AT3G11170.1 | Symbols: FAD7, FADD | FAD7 (FATTY ACID DESATURASE ...    47   3e-06
AT5G05580.1 | Symbols: FAD8 | FAD8 (FATTY ACID DESATURASE 8); om...    47   3e-06

>AT3G12120.2 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2);
           delta12-fatty acid dehydrogenase/ omega-6 fatty acid
           desaturase | chr3:3860592-3861743 REVERSE
          Length = 383

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 43/50 (86%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQFDRTPFFKAMWREGKKSAFT 50
           VAHHLFSTMPHY+AMEAT AIKPILG+YYQFD TP++ AM+RE K+  + 
Sbjct: 316 VAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAKECIYV 365


>AT3G12120.1 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2);
           delta12-fatty acid dehydrogenase/ omega-6 fatty acid
           desaturase | chr3:3860592-3861743 REVERSE
          Length = 383

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 43/50 (86%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQFDRTPFFKAMWREGKKSAFT 50
           VAHHLFSTMPHY+AMEAT AIKPILG+YYQFD TP++ AM+RE K+  + 
Sbjct: 316 VAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAKECIYV 365


>AT3G11170.1 | Symbols: FAD7, FADD | FAD7 (FATTY ACID DESATURASE 7);
           omega-3 fatty acid desaturase | chr3:3499959-3502126
           FORWARD
          Length = 446

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQ 30
           V HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct: 367 VIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396


>AT5G05580.1 | Symbols: FAD8 | FAD8 (FATTY ACID DESATURASE 8);
           omega-3 fatty acid desaturase | chr5:1664331-1666345
           FORWARD
          Length = 435

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQ 30
           V HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct: 360 VIHHLFPQIPHYHLVEATEAAKPVLGKYYR 389