Jatropha Genome Database

JcCD0139598.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0139598.10 + phase: 1 /partial
         (83 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | IPP2 (ISOPENTENYL PY...   143   2e-35
AT5G16440.1 | Symbols: IPP1 | IPP1 (ISOPENTENYL DIPHOSPHATE ISOM...   136   2e-33

>AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | IPP2 (ISOPENTENYL
           PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2);
           isopentenyl-diphosphate delta-isomerase |
           chr3:602578-604648 REVERSE
          Length = 284

 Score =  143 bits (360), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 65/82 (79%), Positives = 77/82 (93%)

Query: 1   DYLLFIVRDVNVNPNPNEVADIKYVNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 60
           DYLLFIVRDV V PNP+EVA+IKYV+R++LKEL++KADAGEEGLKLSPWFRLVVDNFL K
Sbjct: 203 DYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMK 262

Query: 61  WWEHVEQGTLKDVVDMQTIHKL 82
           WW+HVE+GTL + +DM+TIHKL
Sbjct: 263 WWDHVEKGTLVEAIDMKTIHKL 284


>AT5G16440.1 | Symbols: IPP1 | IPP1 (ISOPENTENYL DIPHOSPHATE
           ISOMERASE 1); isopentenyl-diphosphate delta-isomerase |
           chr5:5371765-5373575 FORWARD
          Length = 291

 Score =  136 bits (343), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 75/82 (91%)

Query: 1   DYLLFIVRDVNVNPNPNEVADIKYVNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 60
           DYLLFIVRDV + PNP+EVA+IKYV+R++LKEL++KADAG+E +KLSPWFRLVVDNFL K
Sbjct: 210 DYLLFIVRDVKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSPWFRLVVDNFLMK 269

Query: 61  WWEHVEQGTLKDVVDMQTIHKL 82
           WW+HVE+GT+ +  DM+TIHKL
Sbjct: 270 WWDHVEKGTITEAADMKTIHKL 291