Jatropha Genome Database

JcCD0135314.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0135314.10 - phase: 0 /pseudo/partial
         (73 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62270.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    50   4e-07

>AT5G62270.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: mucin-related (TAIR:AT2G02880.1); Has
           48 Blast hits to 48 proteins in 16 species: Archae - 0;
           Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 40;
           Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
           | chr5:25012227-25014007 FORWARD
          Length = 383

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 5/44 (11%)

Query: 21  LYFQFVSFLCCFPFTQMA--GQVKCHKYSRRRPSEGWNFTVEKM 62
           LY +FV     F F +M   G+V CHKYSRRR SEGW  TVEK+
Sbjct: 299 LYEEFVRR---FEFNKMKWRGEVMCHKYSRRRSSEGWKITVEKL 339