Jatropha Genome Database

JcCD0119024.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0119024.10 - phase: 0 /pseudo/partial
         (112 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27450.1 | Symbols:  | unknown protein | chr4:13727665-137286...    95   1e-20
AT3G15450.1 | Symbols:  | unknown protein | chr3:5213050-5213998...    89   5e-19
AT3G15450.2 | Symbols:  | unknown protein | chr3:5213050-5213766...    70   2e-13
AT5G43830.1 | Symbols:  | unknown protein | chr5:17622593-176242...    70   2e-13
AT3G22850.1 | Symbols:  | unknown protein | chr3:8089067-8090275...    64   2e-11
AT5G19140.1 | Symbols: ATAILP1, AILP1 | AILP1 | chr5:6423398-642...    53   4e-08

>AT4G27450.1 | Symbols:  | unknown protein | chr4:13727665-13728683
           REVERSE
          Length = 250

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 65/95 (68%), Gaps = 4/95 (4%)

Query: 21  IGPYVTVGHTRPIKSSRI---LEGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  + ++   L+G+F  + + + K    F ALG++ GV++YWGIA DGS
Sbjct: 110 IEAYRTLRDRGPYPADQVVKDLDGSFSFVVYDS-KAGSVFTALGSDGGVKLYWGIAADGS 168

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           VVISD+L+ IK  CAKSFAPFP GCMFHSE GLMS
Sbjct: 169 VVISDDLDVIKEGCAKSFAPFPTGCMFHSEGGLMS 203


>AT3G15450.1 | Symbols:  | unknown protein | chr3:5213050-5213998
           FORWARD
          Length = 253

 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 63/95 (66%), Gaps = 4/95 (4%)

Query: 21  IGPYVTVGHTRPIKSSRIL---EGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  + ++L   EG+F  + + T +    F+AL ++ G  +YWGI+GDGS
Sbjct: 109 IEAYRTLRDRGPYPADQVLRGLEGSFAFVVYDT-QTSSVFSALSSDGGESLYWGISGDGS 167

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           VV+SD+++ IK  CAKSFAPFP GCMFHSE GL S
Sbjct: 168 VVMSDDIQIIKQGCAKSFAPFPNGCMFHSETGLKS 202


>AT3G15450.2 | Symbols:  | unknown protein | chr3:5213050-5213766
           FORWARD
          Length = 208

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 4/84 (4%)

Query: 21  IGPYVTVGHTRPIKSSRIL---EGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  + ++L   EG+F  + + T +    F+AL ++ G  +YWGI+GDGS
Sbjct: 109 IEAYRTLRDRGPYPADQVLRGLEGSFAFVVYDT-QTSSVFSALSSDGGESLYWGISGDGS 167

Query: 78  VVISDNLEGIKGSCAKSFAPFPKG 101
           VV+SD+++ IK  CAKSFAPFP G
Sbjct: 168 VVMSDDIQIIKQGCAKSFAPFPNG 191


>AT5G43830.1 | Symbols:  | unknown protein | chr5:17622593-17624239
           REVERSE
          Length = 251

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 52/96 (54%), Gaps = 9/96 (9%)

Query: 18  LKHIGPYVTVGHTRPI-KSSRILEGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDG 76
           L+  GPY       P+ K  R   G F  + F ++K  + FAA  A+  V  +WG   +G
Sbjct: 113 LRDRGPY-------PVDKVVRDFHGKFAFILFDSVKKTV-FAAADADGSVPFFWGTDAEG 164

Query: 77  SVVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
            +V SDN E +K  CAKS+ PFPKGC F S  GL S
Sbjct: 165 HLVFSDNTEMVKKGCAKSYGPFPKGCFFTSSGGLRS 200


>AT3G22850.1 | Symbols:  | unknown protein | chr3:8089067-8090275
           FORWARD
          Length = 248

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 18  LKHIGPYVTVGHTRPIKSSRILEGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           L+  GPY         +  R  +G F  + +     ++ F A   +  V +YWG   +G 
Sbjct: 112 LRDRGPYSAE------QVVRDFQGKFGFMLYDCSTQNV-FLAGDVDGSVPLYWGTDAEGH 164

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           +V+SD++E +K  C KSFAPFPKGC F S  GL S
Sbjct: 165 LVVSDDVETVKKGCGKSFAPFPKGCFFTSSGGLRS 199


>AT5G19140.1 | Symbols: ATAILP1, AILP1 | AILP1 |
           chr5:6423398-6425785 FORWARD
          Length = 234

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 21  IGPYVTVGHTRPIKSSRI---LEGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  ++ +   L G F  + F      + F A      V +YWGI  DG 
Sbjct: 107 IEAYKTLRDRAPYPANHVVAHLSGDFAFVVFDKSTSTL-FVASDQVGKVPLYWGITADGY 165

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQG 109
           V  +D+++ +KG+C KS A FP+GC + +  G
Sbjct: 166 VAFADDVDLLKGACGKSLASFPQGCYYSTALG 197