Jatropha Genome Database

JcCD0116228.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0116228.10 - phase: 1 /partial
         (61 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51550.1 | Symbols: FER | FER (FERONIA); kinase/ protein kina...    89   6e-19
AT5G39000.1 | Symbols:  | protein kinase family protein | chr5:1...    64   2e-11
AT5G38990.1 | Symbols:  | protein kinase family protein | chr5:1...    52   8e-08
AT5G39020.1 | Symbols:  | protein kinase family protein | chr5:1...    51   1e-07
AT3G04690.1 | Symbols:  | protein kinase family protein | chr3:1...    50   2e-07
AT5G28680.1 | Symbols:  | protein kinase family protein | chr5:1...    48   1e-06

>AT3G51550.1 | Symbols: FER | FER (FERONIA); kinase/ protein kinase
           | chr3:19117877-19120564 REVERSE
          Length = 895

 Score = 89.0 bits (219), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 48/60 (80%)

Query: 1   GTPVHKDYVVLIPGGSPQSDMWLALHPNPELKSQYYDALLNGVEIFKIASADGNLAGPNP 60
           G P HKDYVV  P G+ Q D+WLALHPNP  K +YYD+LLNGVEIFK+ ++DGNLAG NP
Sbjct: 362 GVPFHKDYVVNPPEGNGQQDLWLALHPNPVNKPEYYDSLLNGVEIFKMNTSDGNLAGTNP 421


>AT5G39000.1 | Symbols:  | protein kinase family protein |
           chr5:15611860-15614481 FORWARD
          Length = 873

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 3   PVHKDYVVLIPGGSPQS-DMWLALHPNPELKSQYYDALLNGVEIFKIASADGNLAGPNP 60
           P++ DY V+   GS +  D+ L LHP   +  +YYDA+LNGVEI K+   DGNLAGPNP
Sbjct: 359 PMYLDYTVIAGSGSGRRHDLRLDLHPLVSINPKYYDAILNGVEILKMNDPDGNLAGPNP 417


>AT5G38990.1 | Symbols:  | protein kinase family protein |
           chr5:15608824-15611466 FORWARD
          Length = 880

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 2/60 (3%)

Query: 3   PVHKDYVVLIP--GGSPQSDMWLALHPNPELKSQYYDALLNGVEIFKIASADGNLAGPNP 60
           P++ D+ VL+   G S +  + + L P  E    YYDA+L+GVEI K++++DGNLAG NP
Sbjct: 356 PMYLDFKVLVDADGTSQRPSLRVDLTPYKEDYPTYYDAILSGVEILKLSNSDGNLAGLNP 415


>AT5G39020.1 | Symbols:  | protein kinase family protein |
           chr5:15616917-15619358 FORWARD
          Length = 813

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 3   PVHKDYVVLI--PGGSPQSDMWLALHPNPELKSQYYDALLNGVEIFKIASADGNLAGPNP 60
           P++ D+ V +    G  Q ++ L L P  +    YYDA+L+GVEI K+  +DGNLA PNP
Sbjct: 353 PMYLDFSVYVGFESGMIQPELRLDLVPLKDTNQTYYDAILSGVEILKLNDSDGNLARPNP 412


>AT3G04690.1 | Symbols:  | protein kinase family protein |
           chr3:1273386-1275938 REVERSE
          Length = 850

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 1   GTPVHKDYVVLIPGGSPQSDMWLALHPNPELKSQYYDALLNGVEIFKIASADGNLAGPNP 60
           G P++KDY + +   +   ++ L + P+   + +YYD+ LNG+EIFK+ +   NLAGPNP
Sbjct: 350 GIPMYKDYAIYVDANNGGEEITLQMTPSTFGQPEYYDSSLNGLEIFKMDTMK-NLAGPNP 408


>AT5G28680.1 | Symbols:  | protein kinase family protein |
           chr5:10719437-10722013 REVERSE
          Length = 858

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 1   GTPVHKDYVVLIPG--GSPQSDMWLALHPNPELKSQYYDALLNGVEIFKIASADGNLAGP 58
           G P +KDY + +    G    ++ L + P+   + +YYD+ LNG+EIFKI +   NLAGP
Sbjct: 351 GIPTYKDYAIYVDANTGGGGEEISLQMTPSTFGQPEYYDSQLNGLEIFKIDTMK-NLAGP 409

Query: 59  NP 60
           NP
Sbjct: 410 NP 411