Jatropha Genome Database

JcCD0101804.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0101804.10 + phase: 0 /pseudo
         (121 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29570.1 | Symbols: PCNA2, ATPCNA2 | PCNA2 (PROLIFERATING CEL...   206   2e-54
AT1G07370.1 | Symbols: PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUC...   202   3e-53

>AT2G29570.1 | Symbols: PCNA2, ATPCNA2 | PCNA2 (PROLIFERATING CELL
           NUCLEAR ANTIGEN 2); DNA binding / DNA polymerase
           processivity factor | chr2:12650139-12651598 REVERSE
          Length = 264

 Score =  206 bits (525), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 97/107 (90%), Positives = 105/107 (98%)

Query: 1   MLELRLVQGSLLKKVLDAIKELVKDANFDCSTTGFSLQAMDSSHVALVSLLLRAEGFEHY 60
           MLELRLVQGSLLKKVL+A+K+LV DANFDCSTTGFSLQAMDSSHVALVSLLLR+EGFEHY
Sbjct: 1   MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQAMDSSHVALVSLLLRSEGFEHY 60

Query: 61  RCDRNLSMGMNLDNMAKMLKCSGNDDIITIKADDGSDSVTFMFESPS 107
           RCDRNLSMGMNL NM+KMLKC+GNDDIITIKADDGSD+VTFMFESP+
Sbjct: 61  RCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPT 107


>AT1G07370.1 | Symbols: PCNA1 | PCNA1 (PROLIFERATING CELLULAR
           NUCLEAR ANTIGEN); DNA binding / DNA polymerase
           processivity factor/ protein binding |
           chr1:2263204-2264382 FORWARD
          Length = 263

 Score =  202 bits (515), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 104/107 (97%)

Query: 1   MLELRLVQGSLLKKVLDAIKELVKDANFDCSTTGFSLQAMDSSHVALVSLLLRAEGFEHY 60
           MLELRLVQGSLLKKVL++IK+LV DANFDCS+TGFSLQAMDSSHVALVSLLLR+EGFEHY
Sbjct: 1   MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHY 60

Query: 61  RCDRNLSMGMNLDNMAKMLKCSGNDDIITIKADDGSDSVTFMFESPS 107
           RCDRNLSMGMNL NM+KMLKC+GNDDIITIKADDG D+VTFMFESP+
Sbjct: 61  RCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPT 107