Jatropha Genome Database

JcCD0099951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0099951.10 - phase: 0 /partial/short
         (49 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53090.2 | Symbols: UPL7 | UPL7; ubiquitin-protein ligase | c...    74   1e-14
AT3G53090.1 | Symbols: UPL7 | UPL7; ubiquitin-protein ligase | c...    74   1e-14
AT3G17205.2 | Symbols: UPL6 | UPL6 (UBIQUITIN PROTEIN LIGASE 6);...    50   3e-07
AT3G17205.1 | Symbols: UPL6 | UPL6 (UBIQUITIN PROTEIN LIGASE 6);...    50   3e-07

>AT3G53090.2 | Symbols: UPL7 | UPL7; ubiquitin-protein ligase |
           chr3:19679273-19684453 FORWARD
          Length = 1142

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 38/40 (95%)

Query: 10  SFVSECGIPEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQ 49
           SFV+E G+PEAGLDYGGLSKEFLTDI+KAAF+ EYGLFSQ
Sbjct: 805 SFVNESGLPEAGLDYGGLSKEFLTDITKAAFATEYGLFSQ 844


>AT3G53090.1 | Symbols: UPL7 | UPL7; ubiquitin-protein ligase |
           chr3:19679273-19684453 FORWARD
          Length = 1142

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 38/40 (95%)

Query: 10  SFVSECGIPEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQ 49
           SFV+E G+PEAGLDYGGLSKEFLTDI+KAAF+ EYGLFSQ
Sbjct: 805 SFVNESGLPEAGLDYGGLSKEFLTDITKAAFATEYGLFSQ 844


>AT3G17205.2 | Symbols: UPL6 | UPL6 (UBIQUITIN PROTEIN LIGASE 6);
           ubiquitin-protein ligase | chr3:5873528-5881132 FORWARD
          Length = 1015

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 31/40 (77%)

Query: 10  SFVSECGIPEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQ 49
           +FV+E G+ EAG+D GG+ K+F+  I++AAF  +YGLF +
Sbjct: 685 TFVNELGVEEAGIDGGGIFKDFMEKITRAAFDVQYGLFKE 724


>AT3G17205.1 | Symbols: UPL6 | UPL6 (UBIQUITIN PROTEIN LIGASE 6);
           ubiquitin-protein ligase | chr3:5873528-5881132 FORWARD
          Length = 1029

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 31/40 (77%)

Query: 10  SFVSECGIPEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQ 49
           +FV+E G+ EAG+D GG+ K+F+  I++AAF  +YGLF +
Sbjct: 699 TFVNELGVEEAGIDGGGIFKDFMEKITRAAFDVQYGLFKE 738