Jatropha Genome Database

JcCD0092337.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0092337.10 - phase: 0 /pseudo/partial
         (89 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35360.1 | Symbols:  | pantothenate kinase family protein | c...    80   3e-16
AT2G17320.1 | Symbols:  | pantothenate kinase-related | chr2:753...    79   7e-16
AT2G17340.1 | Symbols:  | pantothenate kinase-related | chr2:754...    77   3e-15

>AT4G35360.1 | Symbols:  | pantothenate kinase family protein |
           chr4:16812303-16814656 REVERSE
          Length = 367

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 46/52 (88%)

Query: 1   VILAANDLPSINDVTYPELIEIILKLKDGSGQLVGVDASNLLIANSGNDLPV 52
           V+LAAN+LPSINDVTY EL EI+ KL D +GQL+GVD SNLLIANSGNDLPV
Sbjct: 244 VVLAANELPSINDVTYIELAEILSKLNDENGQLMGVDTSNLLIANSGNDLPV 295


>AT2G17320.1 | Symbols:  | pantothenate kinase-related |
           chr2:7533537-7535876 REVERSE
          Length = 361

 Score = 78.6 bits (192), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 46/52 (88%)

Query: 1   VILAANDLPSINDVTYPELIEIILKLKDGSGQLVGVDASNLLIANSGNDLPV 52
           V+LAAN+LP+INDVTY EL +I+ +LKDG+GQL+GVD S LLIANSGNDL V
Sbjct: 238 VVLAANELPAINDVTYTELTDIVSQLKDGNGQLIGVDTSKLLIANSGNDLAV 289


>AT2G17340.1 | Symbols:  | pantothenate kinase-related |
           chr2:7541615-7544089 REVERSE
          Length = 367

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 45/52 (86%)

Query: 1   VILAANDLPSINDVTYPELIEIILKLKDGSGQLVGVDASNLLIANSGNDLPV 52
           V+LAAN+LPSIND+T  EL EI+ +LKD +GQL+GVD S LLIANSGNDLPV
Sbjct: 244 VVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPV 295