Jatropha Genome Database

JcCD0075623.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0075623.10 - phase: 2 /partial
         (105 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38530.1 | Symbols:  | tryptophan synthase-related | chr5:154...   186   2e-48

>AT5G38530.1 | Symbols:  | tryptophan synthase-related |
           chr5:15424097-15426294 FORWARD
          Length = 506

 Score =  186 bits (473), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 86/104 (82%), Positives = 97/104 (93%)

Query: 1   HVYELGFMEAIAIPQTECFEGAIRFARSEGLIPAPEPTHAIAATIREALHCKETGESKVI 60
           HVYE GFMEAI+IPQ ECF+GAI+FAR+EG+IPAPEPTHAIAATIREAL CKETGE+KVI
Sbjct: 403 HVYEQGFMEAISIPQIECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKETGEAKVI 462

Query: 61  LMAMCGHGHFDLTSYEKYLSGNLVDLSFSEDKIQASLSKVPRIM 104
           LMAMCGHGHFDLTSY+KYL G LVDLSFSE+KI+ SLSKVP ++
Sbjct: 463 LMAMCGHGHFDLTSYDKYLKGELVDLSFSEEKIRESLSKVPHVV 506