Jatropha Genome Database

JcCD0070253.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0070253.10 - phase: 1 /pseudo/partial
         (190 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15130.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...   203   5e-53

>AT1G15130.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr1:5206217-5209848 REVERSE
          Length = 846

 Score =  203 bits (516), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/125 (80%), Positives = 109/125 (87%)

Query: 66  KENDRVYLMRVXXXXXXXXXXAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTE 125
           KENDRVYLMRV          AFSMVKPM M ++LDASKEKMF+ LVPDSSAKALSRYTE
Sbjct: 324 KENDRVYLMRVPSPSSLSPLPAFSMVKPMNMTDILDASKEKMFSILVPDSSAKALSRYTE 383

Query: 126 MVDEVIRTQAEKLQQASELTRVRLKEMDLPESILALEGNFTLPADLKEDVEAVQISGGPA 185
           MVD+VIRTQAE+LQQASELTRVRLKEMDLP+SILA++GN  LP DLKEDVEAVQISGGPA
Sbjct: 384 MVDDVIRTQAERLQQASELTRVRLKEMDLPDSILAVDGNSALPVDLKEDVEAVQISGGPA 443

Query: 186 GLEAE 190
           GLEAE
Sbjct: 444 GLEAE 448