Jatropha Genome Database
- JcCD0068965.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCD0068965.10 - phase: 1 /partial
(124 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);... 127 2e-30
AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);... 123 3e-29
AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 57 2e-09
AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 57 2e-09
AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 57 2e-09
AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);... 52 1e-07
AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 50 5e-07
AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 50 5e-07
AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 50 5e-07
AT3G17600.1 | Symbols: IAA31 | IAA31 (INDOLE-3-ACETIC ACID INDUC... 49 5e-07
AT5G25890.1 | Symbols: IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID... 47 4e-06
>AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);
miRNA binding / transcription factor |
chr4:14703369-14705564 REVERSE
Length = 670
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 75/85 (88%)
Query: 40 LETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIENSETLNNVLYRDITGSVKH 99
LETG CKVFMES+DVGRTLDLS+L SYEEL RKL+DMFGI+ SE L++VLYRD +G++K+
Sbjct: 582 LETGHCKVFMESDDVGRTLDLSVLGSYEELSRKLSDMFGIKKSEMLSSVLYRDASGAIKY 641
Query: 100 IGDEPFSDFMKTARRLTILMDSSSD 124
G+EPFS+F+KTARRLTIL + S+
Sbjct: 642 AGNEPFSEFLKTARRLTILTEQGSE 666
>AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);
miRNA binding / transcription factor |
chr2:12114331-12116665 FORWARD
Length = 693
Score = 123 bits (308), Expect = 3e-29, Method: Composition-based stats.
Identities = 60/86 (69%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 40 LETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIEN-SETLNNVLYRDITGSVK 98
LETG CKVFMESEDVGRTLDLS++ SY+ELYRKLA+MF IE S+ L +V+YRD G +K
Sbjct: 578 LETGHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEERSDLLTHVVYRDANGVIK 637
Query: 99 HIGDEPFSDFMKTARRLTILMDSSSD 124
IGDEPFSDFMK +RLTI MD D
Sbjct: 638 RIGDEPFSDFMKATKRLTIKMDIGGD 663
>AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19104993-19108029 FORWARD
Length = 601
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 34 QENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIENSETLNN---VLY 90
Q+ + S + I KV M+ VGR +DL+LLRSY+EL ++L MF IE + + +++
Sbjct: 483 QKQQTSTRSRI-KVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELSPKDKWAIVF 541
Query: 91 RDITGSVKHIGDEPFSDFMKTARRLTI 117
D G +GD+P+++F K A++L I
Sbjct: 542 TDDEGDRMLVGDDPWNEFCKMAKKLFI 568
>AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105112-19108029 FORWARD
Length = 622
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 34 QENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIENSETLNN---VLY 90
Q+ + S + I KV M+ VGR +DL+LLRSY+EL ++L MF IE + + +++
Sbjct: 504 QKQQTSTRSRI-KVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELSPKDKWAIVF 562
Query: 91 RDITGSVKHIGDEPFSDFMKTARRLTI 117
D G +GD+P+++F K A++L I
Sbjct: 563 TDDEGDRMLVGDDPWNEFCKMAKKLFI 589
>AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105511-19108029 FORWARD
Length = 514
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 34 QENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIENSETLNN---VLY 90
Q+ + S + I KV M+ VGR +DL+LLRSY+EL ++L MF IE + + +++
Sbjct: 396 QKQQTSTRSRI-KVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELSPKDKWAIVF 454
Query: 91 RDITGSVKHIGDEPFSDFMKTARRLTI 117
D G +GD+P+++F K A++L I
Sbjct: 455 TDDEGDRMLVGDDPWNEFCKMAKKLFI 481
>AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);
transcription factor | chr3:22888171-22891179 FORWARD
Length = 602
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 46 KVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIENSETLNN---VLYRDITGSVKHIGD 102
KV M+ VGR +DL+LL+SY+EL +L +MF I+ + V++ D G + GD
Sbjct: 493 KVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLLARDKWIVVFTDDEGDMMLAGD 552
Query: 103 EPFSDFMKTARRLTI 117
+P+++F K A+++ I
Sbjct: 553 DPWNEFCKMAKKIFI 567
>AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 34 QENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIE----NSETLNNVL 89
QE++ KV M+ VGR +DL+ YE+L++KL +MF I+ S V+
Sbjct: 534 QESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVV 593
Query: 90 YRDITGSVKHIGDEPFSDFMKTARRLTI 117
Y D + +GD+P+++F R++ I
Sbjct: 594 YTDDEDDMMMVGDDPWNEFCGMVRKIFI 621
>AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 34 QENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIE----NSETLNNVL 89
QE++ KV M+ VGR +DL+ YE+L++KL +MF I+ S V+
Sbjct: 534 QESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVV 593
Query: 90 YRDITGSVKHIGDEPFSDFMKTARRLTI 117
Y D + +GD+P+++F R++ I
Sbjct: 594 YTDDEDDMMMVGDDPWNEFCGMVRKIFI 621
>AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 662
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 34 QENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIE----NSETLNNVL 89
QE++ KV M+ VGR +DL+ YE+L++KL +MF I+ S V+
Sbjct: 531 QESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVV 590
Query: 90 YRDITGSVKHIGDEPFSDFMKTARRLTI 117
Y D + +GD+P+++F R++ I
Sbjct: 591 YTDDEDDMMMVGDDPWNEFCGMVRKIFI 618
>AT3G17600.1 | Symbols: IAA31 | IAA31 (INDOLE-3-ACETIC ACID
INDUCIBLE 31); transcription factor |
chr3:6020281-6021040 REVERSE
Length = 158
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 45 CKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIE----NSETLNNVL-YRDITGSVKH 99
KV+ME +GR LDL + YE L L+ MF N + ++VL Y D G
Sbjct: 75 VKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGNRDRKHHVLTYEDKDGDWMM 134
Query: 100 IGDEPFSDFMKTARRLTI 117
+GD P+ F++T RRL I
Sbjct: 135 VGDIPWDMFLETVRRLKI 152
>AT5G25890.1 | Symbols: IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID
INDUCIBLE 28); transcription factor |
chr5:9033480-9034554 FORWARD
Length = 175
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 45 CKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIENSETLN---NVLYRDITGSVKHIG 101
K+ ME +GR ++LS +Y++L + +F ++S LN ++Y D G +G
Sbjct: 83 VKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFSKKDSWDLNRQYTLVYEDTEGDKVLVG 142
Query: 102 DEPFSDFMKTARRLTILMDSSS 123
D P+ F+ T +RL +L S +
Sbjct: 143 DVPWEMFVSTVKRLHVLKTSHA 164