Jatropha Genome Database

JcCD0062083.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0062083.10 + phase: 0 
         (73 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00585.1 | Symbols:  | unknown protein | chr4:251157-252284 R...    86   4e-18

>AT4G00585.1 | Symbols:  | unknown protein | chr4:251157-252284
          REVERSE
          Length = 88

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 44/58 (75%)

Query: 2  DTELRAPMGDFRGKVWSMSGGPYCRPKHWRRNTAIAMASVFLICIPIAMKSAELEVFP 59
          D    A  GDFR KVWSM+GGP CRPKHWRRNTAIAM  VFL+CIPIA  SA+LE  P
Sbjct: 5  DHGHGAEGGDFRAKVWSMTGGPNCRPKHWRRNTAIAMFGVFLVCIPIAKLSAKLEQRP 62