Jatropha Genome Database

JcCD0056747.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0056747.10 + phase: 0 /pseudo/partial
         (77 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53580.1 | Symbols:  | diaminopimelate epimerase family prote...    60   4e-10

>AT3G53580.1 | Symbols:  | diaminopimelate epimerase family protein
           | chr3:19864784-19866907 FORWARD
          Length = 362

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 1   FVQVYSHSHLKMCVWERGGVQPXPVER---AXXXXXXXXXXXXXXXXXXXXXXXXEIEWR 57
           FV+V S SHLKM VWERG            A                        EIEW+
Sbjct: 281 FVEVLSRSHLKMRVWERGAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWK 340

Query: 58  EENNHVYMTGPAEVVFYGSV 77
           +E+NH+YMTGPAE VFYGS 
Sbjct: 341 QEDNHIYMTGPAEAVFYGSA 360