Jatropha Genome Database

JcCD0055831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0055831.10 + phase: 0 /partial
         (87 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; chlorophyll bin...   140   1e-34
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | CAB1 (CHLO...   139   2e-34
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB2 (CHLOROPHYLL ...   138   8e-34
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL ...   138   8e-34
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; chlorophyll bin...   135   5e-33
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; chlorophyll bin...    91   1e-19
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; chlorophyll bin...    90   2e-19
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | LHCB2.3; chloro...    88   1e-18
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | LHCB3 (LIGHT-HARVESTING ...    82   5e-17
AT1G76570.1 | Symbols:  | chlorophyll A-B binding family protein...    55   7e-09

>AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; chlorophyll
          binding | chr2:14524818-14525618 FORWARD
          Length = 266

 Score =  140 bits (354), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 74/87 (85%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPELMGNGRVTMRKTASKNVSSGSPWYGPDRVKYLGP 60
          MA STMALSSP+L GKAVKL P+A E+ G GR+TMRK +     SGSPWYG DRVKYLGP
Sbjct: 1  MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGP 60

Query: 61 FSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          FSGEPPSYLTGEFPGDYGWDTAGLSAD
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSAD 87


>AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | CAB1
          (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll
          binding | chr1:10478071-10478874 FORWARD
          Length = 267

 Score =  139 bits (351), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 77/88 (87%), Gaps = 1/88 (1%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPELMGNGRVTMRKTASK-NVSSGSPWYGPDRVKYLG 59
          MA STMALSSP+ AGKAVKL P+A E++G+GRVTMRKT +K    SGSPWYG DRVKYLG
Sbjct: 1  MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          PFSGE PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 61 PFSGESPSYLTGEFPGDYGWDTAGLSAD 88


>AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB2 (CHLOROPHYLL
          A/B-BINDING PROTEIN 2); chlorophyll binding |
          chr1:10475089-10475892 REVERSE
          Length = 267

 Score =  138 bits (347), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPELMGNGRVTMRKTASK-NVSSGSPWYGPDRVKYLG 59
          MA STMALSSP+ AGKAV L P+A E++G+GRVTMRKT +K    SGSPWYG DRVKYLG
Sbjct: 1  MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          PFSGE PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 61 PFSGESPSYLTGEFPGDYGWDTAGLSAD 88


>AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL
          A/B BINDING PROTEIN 3); chlorophyll binding |
          chr1:10472443-10473246 REVERSE
          Length = 267

 Score =  138 bits (347), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPELMGNGRVTMRKTASK-NVSSGSPWYGPDRVKYLG 59
          MA STMALSSP+ AGKAV L P+A E++G+GRVTMRKT +K    SGSPWYG DRVKYLG
Sbjct: 1  MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          PFSGE PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 61 PFSGESPSYLTGEFPGDYGWDTAGLSAD 88


>AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; chlorophyll
          binding | chr2:14522716-14523513 REVERSE
          Length = 265

 Score =  135 bits (340), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 78/88 (88%), Gaps = 3/88 (3%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPELMGNGRVTMRKTASK-NVSSGSPWYGPDRVKYLG 59
          MA+STMALSSP+ AGKAVK  P+A +++G+GRVTMRKT +K    SGSPWYG DRVKYLG
Sbjct: 1  MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 58

Query: 60 PFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          PFSGEPPSYLTGEFPGDYGWDTAGLSAD
Sbjct: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSAD 86


>AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; chlorophyll
          binding | chr2:1799436-1800329 REVERSE
          Length = 265

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 62/92 (67%), Gaps = 10/92 (10%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPEL-----MGNGRVTMRKTASKNVSSGSPWYGPDRV 55
          MATS  A+   S AG+   L PS+  +     +G GRVTMR+T     +  S WYGPDR 
Sbjct: 1  MATS--AIQQSSFAGQTA-LKPSSDLIQKVGVLGGGRVTMRRTVKS--TPQSIWYGPDRP 55

Query: 56 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          KYLGPFS   PSYLTGE+PGDYGWDTAGLSAD
Sbjct: 56 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSAD 87


>AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; chlorophyll
          binding | chr2:1823449-1824331 REVERSE
          Length = 265

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 60/92 (65%), Gaps = 10/92 (10%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPELM-----GNGRVTMRKTASKNVSSGSPWYGPDRV 55
          MATS  A+   S AG+   L PS   L      G GRVTMR+T     +  S WYGPDR 
Sbjct: 1  MATS--AIQQSSFAGQTA-LKPSNELLRKVGVSGGGRVTMRRTVKS--TPQSIWYGPDRP 55

Query: 56 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          KYLGPFS   PSYLTGE+PGDYGWDTAGLSAD
Sbjct: 56 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSAD 87


>AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | LHCB2.3;
          chlorophyll binding | chr3:10256002-10256921 FORWARD
          Length = 266

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 59/93 (63%), Gaps = 11/93 (11%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPELM------GNGRVTMRKTASKNVSSGSPWYGPDR 54
          MATS  A+   S AG+   L PS   L       G GR+ MR+T     +  S WYGPDR
Sbjct: 1  MATS--AIQHSSFAGQTT-LKPSNDLLRKIGASNGGGRIIMRRTVKS--TPQSIWYGPDR 55

Query: 55 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
           KYLGPFS   PSYLTGE+PGDYGWDTAGLSAD
Sbjct: 56 PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSAD 88


>AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | LHCB3 (LIGHT-HARVESTING
          CHLOROPHYLL B-BINDING PROTEIN 3); structural molecule |
          chr5:22038424-22039383 FORWARD
          Length = 265

 Score = 82.4 bits (202), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 42/53 (79%), Gaps = 8/53 (15%)

Query: 43 VSSGSP--------WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          VS GSP        WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 33 VSLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSAD 85


>AT1G76570.1 | Symbols:  | chlorophyll A-B binding family protein |
           chr1:28729132-28730754 FORWARD
          Length = 327

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query: 37  KTASKNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
           K+ ++   + S WYG +R ++ GP   + P YLTGE PGDYG+D AGL  D
Sbjct: 94  KSKAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKD 144