Jatropha Genome Database

JcCD0055602.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0055602.10 - phase: 2 /pseudo/partial
         (114 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34780.1 | Symbols: EMB1611, MEE22 | MEE22 (MATERNAL EFFECT E...    51   1e-07

>AT2G34780.1 | Symbols: EMB1611, MEE22 | MEE22 (MATERNAL EFFECT
           EMBRYO ARREST 22) | chr2:14668653-14673607 FORWARD
          Length = 1297

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%)

Query: 44  TFHLNPKLESAHDNIPTYYVVFSNYNDYDSVSRIFCATRTCLVHCSLDTETESMVKKVLS 103
           T  + P L+  H ++  +++VFSN  D +S+  I  AT  CL  C   T+ +  V  +LS
Sbjct: 800 TVEMPPMLKPLHGHLLKHFIVFSNIEDQNSIIIIIHATNNCLQRCPSVTKEQWAVPAILS 859

Query: 104 VLKMEEKLLPK 114
            LKMEE LL +
Sbjct: 860 SLKMEENLLAQ 870