Jatropha Genome Database

JcCD0054966.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0054966.10 - phase: 0 
         (96 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25930.1 | Symbols: ELF3, PYK20 | ELF3 (EARLY FLOWERING 3); p...   103   2e-23

>AT2G25930.1 | Symbols: ELF3, PYK20 | ELF3 (EARLY FLOWERING 3);
          protein C-terminus binding / transcription factor |
          chr2:11059459-11063178 FORWARD
          Length = 695

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 59/78 (75%), Gaps = 2/78 (2%)

Query: 1  MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRF-NHAVLPLNPS 59
          MKRGKD+EKI+ PMFPRLHVND +KGGPRAPPRNKMALYEQLSIPSQRF +H  +    +
Sbjct: 1  MKRGKDEEKILEPMFPRLHVNDADKGGPRAPPRNKMALYEQLSIPSQRFGDHGTMNSRSN 60

Query: 60 KASNLI-PAASSSQVAVE 76
            S L+ P  SS    VE
Sbjct: 61 NTSTLVHPGPSSQPCGVE 78