Jatropha Genome Database

JcCD0053272.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0053272.10 + phase: 0 /pseudo/partial
         (177 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775)...   192   9e-50

>AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775);
           DNA binding / nucleoside-triphosphatase/ nucleotide
           binding | chr5:9823831-9826869 FORWARD
          Length = 354

 Score =  192 bits (488), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 90/128 (70%), Positives = 98/128 (76%)

Query: 18  QIVKVLELIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIPPMD 77
           +IVKVLE + KKE LQLP GFAARIAEKSNRSLRRAILS ETCRVQ YPFT NQ I PMD
Sbjct: 193 EIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMD 252

Query: 78  WEEYVSEIATDIMREQSPKKLFQVRGKLYELLINCIPPEIIXXXXXXXXXXXXXXXXXXX 137
           WEEYV+EIATD+M+EQSPKKLFQVRGK+YELL+NCIPPE+I                   
Sbjct: 253 WEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELLKKLDSELKLE 312

Query: 138 XSHWAAYY 145
             HWAAYY
Sbjct: 313 VCHWAAYY 320