Jatropha Genome Database

JcCD0051435.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0051435.10 - phase: 2 /pseudo/partial
         (218 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38770.1 | Symbols: EMB2765 | EMB2765 (EMBRYO DEFECTIVE 2765)...   368   e-102

>AT2G38770.1 | Symbols: EMB2765 | EMB2765 (EMBRYO DEFECTIVE 2765) |
           chr2:16203185-16210253 REVERSE
          Length = 1509

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/199 (88%), Positives = 187/199 (93%), Gaps = 1/199 (0%)

Query: 20  DFLI*SSLVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALPKLNLQF 79
           DFL    +VS FEKQQSQKEAINALPLYPNEQIMWDES++PSINYSGEGCLALPKLNLQF
Sbjct: 446 DFLT-EVVVSSFEKQQSQKEAINALPLYPNEQIMWDESVIPSINYSGEGCLALPKLNLQF 504

Query: 80  LTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNEGETAFRGWSRMAVPIKEFKI 139
           LTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLA+INNEG+TAFRGWSRMAVPI +FKI
Sbjct: 505 LTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAHINNEGDTAFRGWSRMAVPINDFKI 564

Query: 140 AEVKQPNIGEVKPSSVTAEVTFSISSYKSQIRSEWNALKEHDVLFLLSIRPSFEPLSAEE 199
           A+VKQPNIGE KPSSVTAEVTFSI SY++QIRSEWN+LKEHDVLFLL IRPSFEPL  EE
Sbjct: 565 AQVKQPNIGEEKPSSVTAEVTFSIKSYRTQIRSEWNSLKEHDVLFLLCIRPSFEPLGPEE 624

Query: 200 AGKATVPQRLGLQYVRGCE 218
           A KATVPQRLGLQYVRGCE
Sbjct: 625 ADKATVPQRLGLQYVRGCE 643