Jatropha Genome Database

JcCD0051196.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0051196.10 - phase: 0 /pseudo/partial
         (309 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLAST...   140   1e-33

>AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1 | RBR1
           (RETINOBLASTOMA-RELATED 1); transcription factor binding
           | chr3:3913671-3918433 REVERSE
          Length = 1013

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 69/77 (89%)

Query: 1   QSTNLLDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSX 60
           Q+ +L+D+IWAEQRRLEA KLYYRVLEAMC AEAQILHA NL SLLTNERFHRCMLACS 
Sbjct: 475 QAVDLMDDIWAEQRRLEACKLYYRVLEAMCKAEAQILHANNLNSLLTNERFHRCMLACSA 534

Query: 61  ELVLAXHKTXTMLFPAV 77
           ELVLA HKT TMLFPAV
Sbjct: 535 ELVLATHKTITMLFPAV 551



 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/71 (87%), Positives = 66/71 (92%), Gaps = 1/71 (1%)

Query: 193 KRSCPDYRSVLVERNSFTSPVKDRLLAFSNLKSK-LPPPLQSAFASPTRPNPGGGGETCA 251
           KR C DYRS+LVERNSFTSPVKDRLLA  N+KSK LPPPLQSAFASPTRPNPGGGGETCA
Sbjct: 667 KRLCTDYRSILVERNSFTSPVKDRLLALGNVKSKMLPPPLQSAFASPTRPNPGGGGETCA 726

Query: 252 ETGINVFFTKV 262
           ETGIN+FFTK+
Sbjct: 727 ETGINIFFTKI 737