Jatropha Genome Database

JcCC0408522.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCC0408522.10 - phase: 0 /pseudo/partial
         (260 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLAST...   413   e-116

>AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1 | RBR1
           (RETINOBLASTOMA-RELATED 1); transcription factor binding
           | chr3:3913671-3918433 REVERSE
          Length = 1013

 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/232 (87%), Positives = 212/232 (91%), Gaps = 2/232 (0%)

Query: 1   EAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVI 60
           EAQILHA NL SLLTNERFHRCMLACSAELVLATHKT+TMLFPAVLERTGITAFDLSKVI
Sbjct: 507 EAQILHANNLNSLLTNERFHRCMLACSAELVLATHKTITMLFPAVLERTGITAFDLSKVI 566

Query: 61  ESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSAEINRLGLLAE 120
           ESFIRHE+SLPRELRRHLNSLEERLLESMVWEKGSSMYNSL VARPSL+ EIN+LGLLAE
Sbjct: 567 ESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVARPSLALEINQLGLLAE 626

Query: 121 PMPSLDAIAMRINFSSGGLPPMPSLQKHELCPGQNGDIRSPKRSCPDYRSVLVERNSFTS 180
           PMPSLDAIA  INFS G      S+QKHE CPGQNG IRSPKR C DYRS+LVERNSFTS
Sbjct: 627 PMPSLDAIAALINFSDGA-NHASSVQKHETCPGQNGGIRSPKRLCTDYRSILVERNSFTS 685

Query: 181 PVKDRLLAFSNLKSK-LPPPLQSAFASPTRPNPGGGGETCAETGINVFFTKV 231
           PVKDRLLA  N+KSK LPPPLQSAFASPTRPNPGGGGETCAETGIN+FFTK+
Sbjct: 686 PVKDRLLALGNVKSKMLPPPLQSAFASPTRPNPGGGGETCAETGINIFFTKI 737