Jatropha Genome Database

JcCB1007071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB1007071.10 + phase: 0 /partial/short
         (33 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47540.1 | Symbols:  | binding | chr5:19283265-19285328 REVERSE     54   2e-08
AT4G17270.1 | Symbols:  | Mo25 family protein | chr4:9676406-967...    52   6e-08
AT2G03410.1 | Symbols:  | Mo25 family protein | chr2:1033907-103...    49   9e-07

>AT5G47540.1 | Symbols:  | binding | chr5:19283265-19285328 REVERSE
          Length = 343

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FL+KN DW   D+NSKLLES +YI
Sbjct: 194 ELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYI 229


>AT4G17270.1 | Symbols:  | Mo25 family protein |
           chr4:9676406-9678568 FORWARD
          Length = 343

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 29/36 (80%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FL KN DW   D+NSKLLES +YI
Sbjct: 194 ELLTRHKSTVAEFLIKNEDWFFADYNSKLLESTNYI 229


>AT2G03410.1 | Symbols:  | Mo25 family protein |
           chr2:1033907-1034953 FORWARD
          Length = 348

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 29/35 (82%), Gaps = 3/35 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSY 32
           ELLTRHKSTVA +L+KNY+W   ++N+KLLE  SY
Sbjct: 195 ELLTRHKSTVAEYLAKNYEWFFAEYNTKLLEKGSY 229