Jatropha Genome Database

JcCB1003421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB1003421.10 - phase: 0 /pseudo/partial
         (115 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58160.1 | Symbols:  | actin binding | chr5:23533724-23539465...   114   1e-26
AT2G25050.1 | Symbols:  | formin homology 2 domain-containing pr...   114   1e-26
AT3G32400.1 | Symbols:  | formin homology 2 domain-containing pr...   103   2e-23
AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761...    98   1e-21
AT5G07780.1 | Symbols:  | formin homology 2 domain-containing pr...    96   3e-21
AT5G07760.1 | Symbols:  | formin homology 2 domain-containing pr...    94   1e-20
AT5G07650.1 | Symbols:  | formin homology 2 domain-containing pr...    92   9e-20
AT5G07770.1 | Symbols:  | formin homology 2 domain-containing pr...    89   5e-19
AT1G42980.1 | Symbols:  | formin homology 2 domain-containing pr...    61   2e-10
AT1G59910.1 | Symbols:  | formin homology 2 domain-containing pr...    48   1e-06
AT1G70140.1 | Symbols: ATFH8 | ATFH8 (formin 8); actin binding /...    45   8e-06

>AT5G58160.1 | Symbols:  | actin binding | chr5:23533724-23539465
            FORWARD
          Length = 1324

 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 62/69 (89%)

Query: 1    MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
            M+VPRVE+KLRVFSFKMQF SQ+S+LR SL VVNS AE+++NS K KRIMQTILSLGNAL
Sbjct: 1014 MKVPRVETKLRVFSFKMQFTSQISELRNSLGVVNSAAEQVKNSEKFKRIMQTILSLGNAL 1073

Query: 61   NQGTARGKS 69
            NQGTARG +
Sbjct: 1074 NQGTARGAA 1082


>AT2G25050.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr2:10654108-10659383 REVERSE
          Length = 1111

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 62/69 (89%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           ++VPRVE+KLRVFSFK+QFHSQV+DLR+ LN ++S A E+R SAKLKRIMQTILSLGNAL
Sbjct: 859 LKVPRVETKLRVFSFKIQFHSQVTDLRRGLNTIHSAANEVRGSAKLKRIMQTILSLGNAL 918

Query: 61  NQGTARGKS 69
           N GTARG +
Sbjct: 919 NHGTARGSA 927


>AT3G32400.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr3:13356995-13360572 REVERSE
          Length = 488

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 60/77 (77%), Gaps = 8/77 (10%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEE--------IRNSAKLKRIMQT 52
           ++VPRVE+KLRVFSFK+QFHSQV+DLR+ LN ++S   E        +R S KLKRIMQT
Sbjct: 235 LKVPRVETKLRVFSFKIQFHSQVTDLRRGLNTIHSATNEASRFFVQIVRGSTKLKRIMQT 294

Query: 53  ILSLGNALNQGTARGKS 69
           ILSLGNALN GTARG +
Sbjct: 295 ILSLGNALNHGTARGSA 311


>AT1G31810.1 | Symbols:  | actin binding | chr1:11399922-11405761
            REVERSE
          Length = 1230

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 58/69 (84%)

Query: 1    MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
            M+VPR+E+KLRVF FK+ F SQV +L+  LN +N+  +E++ SAKL++IMQTIL+LGNAL
Sbjct: 964  MKVPRIEAKLRVFGFKITFASQVEELKSCLNTINAATKEVKESAKLRQIMQTILTLGNAL 1023

Query: 61   NQGTARGKS 69
            NQGTARG +
Sbjct: 1024 NQGTARGSA 1032


>AT5G07780.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2479707-2482638 FORWARD
          Length = 464

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           ++VPRVESKLRVFSFK+QF +Q++ L K LN VNS  EEIR S KLK IM+ IL LGN L
Sbjct: 222 VKVPRVESKLRVFSFKIQFGTQITKLTKGLNAVNSACEEIRTSQKLKDIMENILCLGNIL 281

Query: 61  NQGTARGKS 69
           NQGT RG++
Sbjct: 282 NQGTGRGRA 290


>AT5G07760.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2468239-2473657 FORWARD
          Length = 853

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 53/69 (76%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           M+VP VESKLRVFSFK+ F +Q+ +L K LN VNS  EEIR S KLK IM+ IL LGN L
Sbjct: 600 MKVPGVESKLRVFSFKIHFGTQIKELNKGLNTVNSACEEIRTSQKLKEIMKIILCLGNIL 659

Query: 61  NQGTARGKS 69
           NQGTARG +
Sbjct: 660 NQGTARGSA 668



 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 55/81 (67%), Gaps = 3/81 (3%)

Query: 2   QVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNALN 61
           +V RVESKLRVF FK+QF ++++  +K LNVVNS  EE+ +S KLK IM+ I  LGN  N
Sbjct: 275 KVLRVESKLRVFYFKIQFSTKITQFKKRLNVVNSACEEVCSSQKLKEIMKKITCLGNTSN 334

Query: 62  QGTARGKS---NFYQCCLSTM 79
           QGT RG +   N    C+ +M
Sbjct: 335 QGTGRGVTVGFNLDSLCVKSM 355


>AT5G07650.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2416375-2421814 REVERSE
          Length = 815

 Score = 91.7 bits (226), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 52/69 (75%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           M+VP VESKLR FSFK+QF +Q+++L K LN VNS  EE+R S KLK IM  IL +GN L
Sbjct: 570 MKVPGVESKLRAFSFKIQFGTQIAELNKGLNAVNSACEEVRTSEKLKEIMANILCMGNIL 629

Query: 61  NQGTARGKS 69
           NQGTA G +
Sbjct: 630 NQGTAEGSA 638



 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 57/77 (74%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           M+VPR+E+KLRVFSFK QF +++++L++ LNVV S  EE+R+S KLK IM+ I  LGN  
Sbjct: 203 MKVPRLEAKLRVFSFKTQFGTKITELKERLNVVTSACEEVRSSEKLKEIMKKIPCLGNTS 262

Query: 61  NQGTARGKSNFYQCCLS 77
           NQG  RGKS+     LS
Sbjct: 263 NQGPDRGKSSVVDKNLS 279


>AT5G07770.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr5:2474816-2479022 FORWARD
          Length = 722

 Score = 89.4 bits (220), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 53/69 (76%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           M+VPR E+KLRV SFK+ F ++++  RK LNVVNS  EE+R+S  LK IM+ IL LGN L
Sbjct: 328 MKVPRFEAKLRVLSFKIPFGTKITKFRKMLNVVNSACEEVRSSQMLKEIMKIILFLGNTL 387

Query: 61  NQGTARGKS 69
           NQGTARG +
Sbjct: 388 NQGTARGSA 396


>AT1G42980.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr1:16133344-16135456 FORWARD
          Length = 299

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 42/56 (75%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSL 56
           M VPR+E KLRVF+FK+++ S+VSDL+  ++ + +  +EI  S KL RIMQT L++
Sbjct: 74  MMVPRIEPKLRVFAFKVEYPSRVSDLKMWMHTIIAATKEITGSVKLFRIMQTSLTM 129


>AT1G59910.1 | Symbols:  | formin homology 2 domain-containing
           protein / FH2 domain-containing protein |
           chr1:22054167-22057052 REVERSE
          Length = 929

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 3   VPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNALNQ 62
           VP   ++  V  FK+ + S+V+  + SL  + S   E+R      ++++ IL  GN +N 
Sbjct: 608 VPSAFNRFNVMLFKINYGSEVAQQKGSLLTLESACNELRARGLFMKLLEAILKAGNRMNA 667

Query: 63  GTARGKSNFY 72
           GTARG +  +
Sbjct: 668 GTARGNAQAF 677


>AT1G70140.1 | Symbols: ATFH8 | ATFH8 (formin 8); actin binding /
           actin filament binding / profilin binding |
           chr1:26412688-26415048 REVERSE
          Length = 760

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 39/70 (55%)

Query: 3   VPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNALNQ 62
           VP   ++L  F F+  ++ +++   K L  ++   +E+R+     ++++ IL  GN +N 
Sbjct: 446 VPTAFTRLNAFLFRANYYPEMAHHSKCLQTLDLACKELRSRGLFVKLLEAILKAGNRMNA 505

Query: 63  GTARGKSNFY 72
           GTARG +  +
Sbjct: 506 GTARGNAQAF 515