Jatropha Genome Database

JcCB0979461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0979461.10 - phase: 2 /partial
         (123 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34020.2 | Symbols:  | DJ-1 family protein | chr4:16298553-16...   112   4e-26
AT4G34020.1 | Symbols:  | DJ-1 family protein | chr4:16298553-16...   112   5e-26
AT3G14990.1 | Symbols:  | 4-methyl-5(b-hydroxyethyl)-thiazole mo...    83   4e-17
AT3G14990.3 | Symbols:  | 4-methyl-5(b-hydroxyethyl)-thiazole mo...    83   4e-17
AT3G14990.2 | Symbols:  | 4-methyl-5(b-hydroxyethyl)-thiazole mo...    83   4e-17
AT1G53280.1 | Symbols:  | DJ-1 family protein | chr1:19864942-19...    74   2e-14

>AT4G34020.2 | Symbols:  | DJ-1 family protein |
           chr4:16298553-16300897 REVERSE
          Length = 437

 Score =  112 bits (281), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/113 (53%), Positives = 76/113 (67%), Gaps = 1/113 (0%)

Query: 11  LQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAVLHNQGLLKDKKATAHPSVEN 70
           L G   G++R            EQ  +GRIYGA  SS  VLH  GLLK+K+ T +PS  +
Sbjct: 319 LPGGHTGSERLQKSKILKKLLREQHESGRIYGATNSSSTVLHKHGLLKEKRTTVYPSESD 378

Query: 71  Q-LSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLV 122
           + ++  +I  A+VVIDG VITS G ATVT F++AIVSKLFGHARARSV+EGLV
Sbjct: 379 EPMNQQMIEGAEVVIDGNVITSLGLATVTKFSLAIVSKLFGHARARSVSEGLV 431



 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 8   LSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAV-LHNQGLLKDKKATAHP 66
           L  L G + GA R             Q    R+YGA+  +PA+ L   GLL  K+ T HP
Sbjct: 113 LVALPGGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRKRTTGHP 172

Query: 67  SVENQLSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLVF 123
           +   +L         + I G++ TS+G  T   FA+++  +LFG   A+S+ E L+ 
Sbjct: 173 AFFGKLPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLLL 229


>AT4G34020.1 | Symbols:  | DJ-1 family protein |
           chr4:16298553-16300897 REVERSE
          Length = 472

 Score =  112 bits (280), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/113 (53%), Positives = 76/113 (67%), Gaps = 1/113 (0%)

Query: 11  LQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAVLHNQGLLKDKKATAHPSVEN 70
           L G   G++R            EQ  +GRIYGA  SS  VLH  GLLK+K+ T +PS  +
Sbjct: 354 LPGGHTGSERLQKSKILKKLLREQHESGRIYGATNSSSTVLHKHGLLKEKRTTVYPSESD 413

Query: 71  Q-LSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLV 122
           + ++  +I  A+VVIDG VITS G ATVT F++AIVSKLFGHARARSV+EGLV
Sbjct: 414 EPMNQQMIEGAEVVIDGNVITSLGLATVTKFSLAIVSKLFGHARARSVSEGLV 466



 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 8   LSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAV-LHNQGLLKDKKATAHP 66
           L  L G + GA R             Q    R+YGA+  +PA+ L   GLL  K+ T HP
Sbjct: 148 LVALPGGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRKRTTGHP 207

Query: 67  SVENQLSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLVF 123
           +   +L         + I G++ TS+G  T   FA+++  +LFG   A+S+ E L+ 
Sbjct: 208 AFFGKLPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEFLLL 264


>AT3G14990.1 | Symbols:  | 4-methyl-5(b-hydroxyethyl)-thiazole
           monophosphate biosynthesis protein, putative |
           chr3:5047510-5049621 FORWARD
          Length = 392

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 6   FFLSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPA-VLHNQGLLKDKKATA 64
           F L  L G + GAQR            +Q  A + YG +C+SPA V    GLLK KKAT 
Sbjct: 274 FDLIVLPGGLNGAQRFASCEKLVNMLRKQAEANKPYGGICASPAYVFEPNGLLKGKKATT 333

Query: 65  HPSVENQLSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARA 114
           HP V ++LS+    + +VV+DG VITS+   T  +F++AIV K +G  +A
Sbjct: 334 HPVVSDKLSDKSHIEHRVVVDGNVITSRAPGTAMEFSLAIVEKFYGREKA 383



 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 6   FFLSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAV-LHNQGLLKDKKATA 64
           F L  L G + G +             +QD+ GR+  A+C +PA+ L   GLL+ KKAT 
Sbjct: 68  FDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATG 127

Query: 65  HPSVENQLSNNVIN--DAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLV 122
           +P    +L+       +++V IDG+++TS+G  T  +F++ ++ +LFG  +A  V+  L+
Sbjct: 128 YPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILL 187

Query: 123 F 123
            
Sbjct: 188 L 188


>AT3G14990.3 | Symbols:  | 4-methyl-5(b-hydroxyethyl)-thiazole
           monophosphate biosynthesis protein, putative |
           chr3:5047683-5049621 FORWARD
          Length = 369

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 6   FFLSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPA-VLHNQGLLKDKKATA 64
           F L  L G + GAQR            +Q  A + YG +C+SPA V    GLLK KKAT 
Sbjct: 251 FDLIVLPGGLNGAQRFASCEKLVNMLRKQAEANKPYGGICASPAYVFEPNGLLKGKKATT 310

Query: 65  HPSVENQLSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARA 114
           HP V ++LS+    + +VV+DG VITS+   T  +F++AIV K +G  +A
Sbjct: 311 HPVVSDKLSDKSHIEHRVVVDGNVITSRAPGTAMEFSLAIVEKFYGREKA 360



 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 6   FFLSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAV-LHNQGLLKDKKATA 64
           F L  L G + G +             +QD+ GR+  A+C +PA+ L   GLL+ KKAT 
Sbjct: 45  FDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATG 104

Query: 65  HPSVENQLSNNVIN--DAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLV 122
           +P    +L+       +++V IDG+++TS+G  T  +F++ ++ +LFG  +A  V+  L+
Sbjct: 105 YPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILL 164

Query: 123 F 123
            
Sbjct: 165 L 165


>AT3G14990.2 | Symbols:  | 4-methyl-5(b-hydroxyethyl)-thiazole
           monophosphate biosynthesis protein, putative |
           chr3:5047683-5049621 FORWARD
          Length = 369

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 6   FFLSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPA-VLHNQGLLKDKKATA 64
           F L  L G + GAQR            +Q  A + YG +C+SPA V    GLLK KKAT 
Sbjct: 251 FDLIVLPGGLNGAQRFASCEKLVNMLRKQAEANKPYGGICASPAYVFEPNGLLKGKKATT 310

Query: 65  HPSVENQLSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARA 114
           HP V ++LS+    + +VV+DG VITS+   T  +F++AIV K +G  +A
Sbjct: 311 HPVVSDKLSDKSHIEHRVVVDGNVITSRAPGTAMEFSLAIVEKFYGREKA 360



 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 6   FFLSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAV-LHNQGLLKDKKATA 64
           F L  L G + G +             +QD+ GR+  A+C +PA+ L   GLL+ KKAT 
Sbjct: 45  FDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATG 104

Query: 65  HPSVENQLSNNVIN--DAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLV 122
           +P    +L+       +++V IDG+++TS+G  T  +F++ ++ +LFG  +A  V+  L+
Sbjct: 105 YPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILL 164

Query: 123 F 123
            
Sbjct: 165 L 165


>AT1G53280.1 | Symbols:  | DJ-1 family protein |
           chr1:19864942-19867341 REVERSE
          Length = 438

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 1/104 (0%)

Query: 11  LQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPA-VLHNQGLLKDKKATAHPSVE 69
           L G + GA+             +Q  + + YGA+C+SPA V    GLLK KKATA P++ 
Sbjct: 325 LPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLKGKKATAFPAMC 384

Query: 70  NQLSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHAR 113
           ++L++    + +V++DG +ITS+G  T  +FA+AIV K +G  +
Sbjct: 385 SKLTDQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYGREK 428



 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 6   FFLSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAV-LHNQGLLKDKKATA 64
           F L  L G + G +             +QD  GR+  A+C +PA+     GLL+ KKAT 
Sbjct: 115 FDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLLEGKKATC 174

Query: 65  HPSVENQLSNNVIN-DAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLVF 123
           +P    +L+      +++V IDGK++TS+G  T  +F++ +V +L G  +A  V+  LV 
Sbjct: 175 YPVFMEKLAACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEVSGPLVM 234