Jatropha Genome Database

JcCB0971961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0971961.10 - phase: 0 
         (138 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G37510.2 | Symbols: EMB1467 | EMB1467 (embryo defective 1467)...   188   9e-49
AT5G37510.1 | Symbols: EMB1467 | EMB1467 (embryo defective 1467)...   188   1e-48

>AT5G37510.2 | Symbols: EMB1467 | EMB1467 (embryo defective 1467);
           NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/
           electron carrier/ iron-sulfur cluster binding /
           oxidoreductase/ oxidoreductase, acting on NADH or NADPH
           | chr5:14897490-14900447 FORWARD
          Length = 748

 Score =  188 bits (477), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 103/141 (73%), Gaps = 3/141 (2%)

Query: 1   MGLGILASRVIRPHA---TKPRNLLLLRSIVTKPELQSXXXXXXXXXXXXXXXXXXXXXX 57
           MGLGILASR IRP +       +   LR+IV+KPELQS                      
Sbjct: 1   MGLGILASRTIRPASRLLQSQTSNFFLRTIVSKPELQSPESAAVSEPEPPTQILPPRNPV 60

Query: 58  XGARVHFPNPDDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMC 117
            GARVHF NP+DAIEVFVDGY VK+PKG TVLQACEVAGVDIPRFCYHSRLSIAGNCRMC
Sbjct: 61  GGARVHFSNPEDAIEVFVDGYAVKVPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMC 120

Query: 118 LVEVEKSPKPVASCAMPALPG 138
           LVEVEKSPKPVASCAMPALPG
Sbjct: 121 LVEVEKSPKPVASCAMPALPG 141


>AT5G37510.1 | Symbols: EMB1467 | EMB1467 (embryo defective 1467);
           NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/
           electron carrier/ iron-sulfur cluster binding /
           oxidoreductase/ oxidoreductase, acting on NADH or NADPH
           | chr5:14897490-14900352 FORWARD
          Length = 745

 Score =  188 bits (477), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 103/141 (73%), Gaps = 3/141 (2%)

Query: 1   MGLGILASRVIRPHA---TKPRNLLLLRSIVTKPELQSXXXXXXXXXXXXXXXXXXXXXX 57
           MGLGILASR IRP +       +   LR+IV+KPELQS                      
Sbjct: 1   MGLGILASRTIRPASRLLQSQTSNFFLRTIVSKPELQSPESAAVSEPEPPTQILPPRNPV 60

Query: 58  XGARVHFPNPDDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMC 117
            GARVHF NP+DAIEVFVDGY VK+PKG TVLQACEVAGVDIPRFCYHSRLSIAGNCRMC
Sbjct: 61  GGARVHFSNPEDAIEVFVDGYAVKVPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMC 120

Query: 118 LVEVEKSPKPVASCAMPALPG 138
           LVEVEKSPKPVASCAMPALPG
Sbjct: 121 LVEVEKSPKPVASCAMPALPG 141