Jatropha Genome Database

JcCB0971801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0971801.10 + phase: 0 /partial
         (100 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15810.1 | Symbols:  | unknown protein | chr3:5348054-5349178...   153   2e-38
AT1G80120.1 | Symbols:  | unknown protein | chr1:30139198-301399...   132   6e-32
AT3G11740.1 | Symbols:  | unknown protein | chr3:3712427-3713389...    57   3e-09
AT5G01750.2 | Symbols:  | unknown protein | chr5:290034-291109 F...    54   1e-08
AT5G20640.1 | Symbols:  | unknown protein | chr5:6984379-6985205...    53   5e-08
AT2G38640.1 | Symbols:  | unknown protein | chr2:16157725-161584...    46   5e-06
AT2G05910.1 | Symbols:  | unknown protein | chr2:2258512-2259376...    46   6e-06

>AT3G15810.1 | Symbols:  | unknown protein | chr3:5348054-5349178
           REVERSE
          Length = 220

 Score =  153 bits (387), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 86/100 (86%)

Query: 1   RPSLHNRWEGYLGERSDGQKPIFSVRRSSMIGRCSVAVEVYGNPGEEYQIEGSFANRCCT 60
           RP+LH RWEG+LGERS+GQKPIFSVRRSS+IGRC++ VEVY   GEEY I+G F+ R C 
Sbjct: 90  RPTLHQRWEGFLGERSEGQKPIFSVRRSSIIGRCTMEVEVYDGTGEEYIIDGDFSQRSCL 149

Query: 61  IFNTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           I++T K +VAEI+RKVDASTNV+LG+DVF+L +KPGFD A
Sbjct: 150 IYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGA 189


>AT1G80120.1 | Symbols:  | unknown protein | chr1:30139198-30139986
           FORWARD
          Length = 210

 Score =  132 bits (331), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 75/95 (78%), Gaps = 2/95 (2%)

Query: 8   WEGYLGERSDGQKPIFSVRRSSMIGRCSVAVEVYGNPG-EEYQIEGSFANRCCTIFNT-V 65
           WEGYLGERSDGQKPIF VRRSS+IGR SV VEVYG+    EY IEGSF  R CT+     
Sbjct: 84  WEGYLGERSDGQKPIFGVRRSSIIGRNSVTVEVYGDYQCSEYLIEGSFGARNCTVVEAET 143

Query: 66  KESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           +  VAEIRRKVDASTNV+LGKDVFSL +KPGFD A
Sbjct: 144 RRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGA 178


>AT3G11740.1 | Symbols:  | unknown protein | chr3:3712427-3713389
           FORWARD
          Length = 194

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 57/105 (54%), Gaps = 5/105 (4%)

Query: 1   RPSLHNRWEGYLGERSDGQKPIFSVRRSSMIGRCSVAVEVYGNPGEE-----YQIEGSFA 55
           + SLH+RW  Y G+ +D    +++++RSSMI      ++++    +E     + ++GS+ 
Sbjct: 71  KVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAHNKEMKICDFHVKGSWI 130

Query: 56  NRCCTIFNTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           +R C ++    +++     K   + ++++GK  FS+ + P  D A
Sbjct: 131 DRSCVVYAGKSDAIVAQMHKKHTAQSILIGKSNFSVTVYPNVDFA 175


>AT5G01750.2 | Symbols:  | unknown protein | chr5:290034-291109
           FORWARD
          Length = 217

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 61/103 (59%), Gaps = 6/103 (5%)

Query: 3   SLHNRWEGYLGERSDGQKPIFSVRRSSMIG-RCSVAVEVYGNPGE---EYQIEGSFANRC 58
           S+H+RW+ + G  +D +  +++V+RSSM+  +  + V +  N  E   +++++GS+  R 
Sbjct: 97  SMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERS 156

Query: 59  CTIFNTVKES-VAEIRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           C ++    ++ VA++ RK     +V LGKD FS+ + P  D A
Sbjct: 157 CVVYAGESDAIVAQMHRK-HTVQSVFLGKDNFSVTVYPNVDYA 198


>AT5G20640.1 | Symbols:  | unknown protein | chr5:6984379-6985205
           FORWARD
          Length = 215

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 58/107 (54%), Gaps = 10/107 (9%)

Query: 4   LHNRWEGYLGERSDGQKPIFSVRR---SSMIGRCSVAVEVYGNP-------GEEYQIEGS 53
           +HN+WEG+  +    ++ +F+++    S ++   S+ + V+G P           +I+GS
Sbjct: 90  VHNKWEGFGYDNEGTERLVFTLKDPKDSCLVQNSSIKILVHGKPPKISSTRNNYVEIKGS 149

Query: 54  FANRCCTIFNTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           FA R C I ++  +++A++R + +    V   KD++ + +KP  D +
Sbjct: 150 FAERACNIMDSDGKAIAKVRIEKEMEEMVGNKKDLYHVIVKPNVDQS 196


>AT2G38640.1 | Symbols:  | unknown protein | chr2:16157725-16158474
           REVERSE
          Length = 196

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 1   RPSLHNRWEGYLGERSDGQKPIFSVRRS-SMIGRCSVAVEVYGNPGEEYQIEGSFANRCC 59
           + SL + W  Y GE    + PIF+ R++ S+I        V       Y+IEGS+  R C
Sbjct: 80  KLSLGDCWMVYDGETE--RDPIFTARKNVSIISNRKSLAWVSAKKTVLYEIEGSYGQRSC 137

Query: 60  TIFNTV--KESVAEIRRKVDASTNVVLGKDVFSLCLK 94
            I +    K+  AEI+RK      V  GKDV+ L ++
Sbjct: 138 KILDERRNKKKTAEIKRKETVIGGVAFGKDVYKLIVE 174


>AT2G05910.1 | Symbols:  | unknown protein | chr2:2258512-2259376
           REVERSE
          Length = 191

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 11/101 (10%)

Query: 3   SLHNRWEGYLGERSDGQKPIFSVR--RSSMIGRCSVAVEVYGNPGEEY-QIEGSFANRCC 59
           S+HN+W+GY  +     KP+F++R  + S     S ++ +   PG  Y  ++G F +R C
Sbjct: 80  SIHNKWKGYSYDYQGSPKPVFTLRDPKHSCFSITS-SIRISVGPGNCYFDVKGYFPDRDC 138

Query: 60  TIFNTVKESVAEIRRKVDASTNVVLGKDVFSLCLKPGFDAA 100
           +I ++    +A+++  + +       +D++ +  KP  D A
Sbjct: 139 SIVDSKGNVIAQVKEWIGS-------RDIYKVVTKPSVDKA 172