Jatropha Genome Database

JcCB0960711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0960711.10 - phase: 0 /pseudo
         (208 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21630.1 | Symbols: CERK1, LYSM RLK1 | CERK1 (CHITIN ELICITOR...   175   1e-44

>AT3G21630.1 | Symbols: CERK1, LYSM RLK1 | CERK1 (CHITIN ELICITOR
           RECEPTOR KINASE 1); kinase/ receptor signaling protein/
           transmembrane receptor protein kinase |
           chr3:7615543-7618530 REVERSE
          Length = 617

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 125/200 (62%), Gaps = 17/200 (8%)

Query: 20  FKAEAKCKSGCELSLASYNVWEGVNLTYI-SNL-----------FXPNHPSNSPFTIPNV 67
           F  E+KC++ C L+LASY +  G  L+ I  NL           F P    NS     N+
Sbjct: 19  FAVESKCRTSCPLALASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNS-----NI 73

Query: 68  TNQDSILVDTRLNIPFSCDCLNGDFLGHTFKYTTQPGDTYDRIAKYAFANLTTEDWVHRV 127
            ++D I + +R+ +PF C+C  GDFLGH F Y+ +  DTY+R+A   +ANLTT + +   
Sbjct: 74  KDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYANLTTMESLQAR 133

Query: 128 NIYKTTRIPDYVPINVTVNCSCGDKRVSKDYGLFTTYPLGAADNLSSLAEESGVRPDLLQ 187
           N +  T IP    +NV VNCSCGD+ VSKD+GLF TYPL   D+LSS+A  SGV  D+LQ
Sbjct: 134 NPFPATNIPLSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLSSIARSSGVSADILQ 193

Query: 188 RYNPGKNFSEGSGIIFVPAK 207
           RYNPG NF+ G+GI++VP +
Sbjct: 194 RYNPGVNFNSGNGIVYVPGR 213