Jatropha Genome Database

JcCB0942771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0942771.10 + phase: 0 /pseudo/partial
         (59 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48850.3 | Symbols: EMB1144 | EMB1144 (embryo defective 1144)...    77   2e-15
AT1G48850.2 | Symbols: EMB1144 | EMB1144 (embryo defective 1144)...    77   2e-15
AT1G48850.1 | Symbols: EMB1144 | EMB1144 (embryo defective 1144)...    77   2e-15

>AT1G48850.3 | Symbols: EMB1144 | EMB1144 (embryo defective 1144);
           chorismate synthase | chr1:18065399-18067956 REVERSE
          Length = 380

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 42/42 (100%)

Query: 1   MKYGVRAVKGGGRSSARETIGRVAPGAIAKKILKQFSGTEVV 42
           MKYGVR+V+GGGRSSARETIGRVAPGA+AKKILKQF+GTE++
Sbjct: 162 MKYGVRSVQGGGRSSARETIGRVAPGALAKKILKQFAGTEIL 203


>AT1G48850.2 | Symbols: EMB1144 | EMB1144 (embryo defective 1144);
           chorismate synthase | chr1:18065399-18067956 REVERSE
          Length = 380

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 42/42 (100%)

Query: 1   MKYGVRAVKGGGRSSARETIGRVAPGAIAKKILKQFSGTEVV 42
           MKYGVR+V+GGGRSSARETIGRVAPGA+AKKILKQF+GTE++
Sbjct: 162 MKYGVRSVQGGGRSSARETIGRVAPGALAKKILKQFAGTEIL 203


>AT1G48850.1 | Symbols: EMB1144 | EMB1144 (embryo defective 1144);
           chorismate synthase | chr1:18065154-18067956 REVERSE
          Length = 436

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/47 (78%), Positives = 44/47 (93%)

Query: 1   MKYGVRAVKGGGRSSARETIGRVAPGAIAKKILKQFSGTEVVIGVKR 47
           MKYGVR+V+GGGRSSARETIGRVAPGA+AKKILKQF+GTE++  V +
Sbjct: 162 MKYGVRSVQGGGRSSARETIGRVAPGALAKKILKQFAGTEILAYVSQ 208