Jatropha Genome Database
- JcCB0940751.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0940751.10 + phase: 0 /pseudo/partial
(247 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12560.2 | Symbols: | F-box family protein | chr4:7441815-74... 70 2e-12
AT4G12560.1 | Symbols: | F-box family protein | chr4:7441815-74... 70 2e-12
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 57 1e-08
AT1G49790.1 | Symbols: | F-box family protein-related | chr1:18... 50 9e-07
AT1G49790.2 | Symbols: | F-box family protein-related | chr1:18... 50 9e-07
AT4G22390.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 48 5e-06
>AT4G12560.2 | Symbols: | F-box family protein |
chr4:7441815-7443157 FORWARD
Length = 413
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 129 FGFGYDPISDDYKVVRLGQY-LDLSD---GHFETETLVCNLKDNAWREIPGMS------- 177
+G GYD +SDDYKVVR+ Q+ +D D F E V +LK N+W+ I ++
Sbjct: 140 YGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLF 199
Query: 178 ---YMLGIDQKMGVLVGDALHWLVSLKFMLINPNQIVGFDVRVEQFREVPAPRIFVDQNA 234
Y L + GVL G++LHW++ + LI N IV FD+ +E+F V P + N
Sbjct: 200 YFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNV 259
Query: 235 YASLEVVTL 243
+++ L
Sbjct: 260 DIQMDIGVL 268
>AT4G12560.1 | Symbols: | F-box family protein |
chr4:7441815-7443157 FORWARD
Length = 413
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 129 FGFGYDPISDDYKVVRLGQY-LDLSD---GHFETETLVCNLKDNAWREIPGMS------- 177
+G GYD +SDDYKVVR+ Q+ +D D F E V +LK N+W+ I ++
Sbjct: 140 YGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLF 199
Query: 178 ---YMLGIDQKMGVLVGDALHWLVSLKFMLINPNQIVGFDVRVEQFREVPAPRIFVDQNA 234
Y L + GVL G++LHW++ + LI N IV FD+ +E+F V P + N
Sbjct: 200 YFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNV 259
Query: 235 YASLEVVTL 243
+++ L
Sbjct: 260 DIQMDIGVL 268
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD
Length = 427
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 14/103 (13%)
Query: 128 SFGFGYDPISDDYKVVRL-GQYLDLSDGHFETETLVCNLKDNAWREIPGMSYMLGIDQ-K 185
++GFG+D ++DDYK+V+L D+ D V +LK ++WR I ++Y
Sbjct: 213 TYGFGFDGLTDDYKLVKLVATSEDILDAS------VYSLKADSWRRICNLNYEHNDGSYT 266
Query: 186 MGVLVGDALHWLVSLKFMLINPNQ--IVGFDVRVEQFREVPAP 226
GV A+HW+ F NQ +V FD++ E+FRE+P P
Sbjct: 267 SGVHFNGAIHWV----FTESRHNQRVVVAFDIQTEEFREMPVP 305
>AT1G49790.1 | Symbols: | F-box family protein-related |
chr1:18436137-18437068 REVERSE
Length = 283
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 127 WSFGFGYDPISDDYKVVRLGQYLDLSDGHFETETLVCNLKD---NAWREIPGMSYMLGID 183
W+ GFG D ++ YK+VR+ L D HFE C + D WR+ Y +G
Sbjct: 102 WTMGFGRDNVNGSYKIVRM-----LFDRHFENR--YCQILDVNIGEWRKQRQPPYFVGYR 154
Query: 184 QKMGVLVGDALHWLVSLKFMLINPNQIVGFDVRVEQFREVPAP 226
+K + G +++W +L +++ FD+ E+FR+VP P
Sbjct: 155 EKSACVNG-SIYWSQALIRC-----KLLAFDLYSEEFRDVPTP 191
>AT1G49790.2 | Symbols: | F-box family protein-related |
chr1:18435351-18437068 REVERSE
Length = 306
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 127 WSFGFGYDPISDDYKVVRLGQYLDLSDGHFETETLVCNLKD---NAWREIPGMSYMLGID 183
W+ GFG D ++ YK+VR+ L D HFE C + D WR+ Y +G
Sbjct: 102 WTMGFGRDNVNGSYKIVRM-----LFDRHFENR--YCQILDVNIGEWRKQRQPPYFVGYR 154
Query: 184 QKMGVLVGDALHWLVSLKFMLINPNQIVGFDVRVEQFREVPAP 226
+K + G +++W +L +++ FD+ E+FR+VP P
Sbjct: 155 EKSACVNG-SIYWSQALIRC-----KLLAFDLYSEEFRDVPTP 191
>AT4G22390.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
F-box associated type 1 (InterPro:IPR017451); BEST
Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT4G12560.2); Has 662 Blast hits to 662
proteins in 37 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 662; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr4:11813757-11815074 REVERSE
Length = 402
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 129 FGFGYDPISDDYKVVRLGQYLDLSDGHFE----TETLVCNLKDNAWREIPGM-------- 176
+G GYD + DD+KVVR+ Q L +G + E V +LK N+W+ + M
Sbjct: 140 YGLGYDSVGDDFKVVRIVQ-CKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQILWI 198
Query: 177 --SYMLGIDQKMGVLVGDALHWLVSLKFMLINPNQIVGFDV 215
Y L + GV+V + LHW++ + +I N I+ +D+
Sbjct: 199 SYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDL 239