Jatropha Genome Database

JcCB0907471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0907471.10 - phase: 2 /partial
         (85 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10590.1 | Symbols: UBP10 | ubiquitin carboxyl-terminal hydro...    71   1e-13
AT4G10590.2 | Symbols: UBP10 | ubiquitin carboxyl-terminal hydro...    71   1e-13
AT4G10570.1 | Symbols: UBP9 | UBP9 (UBIQUITIN-SPECIFIC PROTEASE ...    66   4e-12
AT1G32850.1 | Symbols: UBP11 | UBP11 (UBIQUITIN-SPECIFIC PROTEAS...    56   4e-09
AT2G40930.1 | Symbols: UBP5, ATUBP5, PDE323 | UBP5 (UBIQUITIN-SP...    50   3e-07

>AT4G10590.1 | Symbols: UBP10 | ubiquitin carboxyl-terminal
           hydrolase family protein | chr4:6538919-6543272 REVERSE
          Length = 910

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 14/85 (16%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESDDLE 60
           WY SWEKYV Q + +  + G+S +           A RPGPI+N +I+E+ S  + +D +
Sbjct: 52  WYTSWEKYVEQSTKEY-ISGESSE-----------ASRPGPIDNHDIIESES--DVNDPQ 97

Query: 61  LARTLLEGRDYVLVPQKVWEKLVQW 85
           L R L+E  DYVLVPQ+VW++LV+W
Sbjct: 98  LRRLLMERVDYVLVPQEVWKRLVEW 122


>AT4G10590.2 | Symbols: UBP10 | ubiquitin carboxyl-terminal
           hydrolase family protein | chr4:6538919-6543272 REVERSE
          Length = 910

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 14/85 (16%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESDDLE 60
           WY SWEKYV Q + +  + G+S +           A RPGPI+N +I+E+ S  + +D +
Sbjct: 52  WYTSWEKYVEQSTKEY-ISGESSE-----------ASRPGPIDNHDIIESES--DVNDPQ 97

Query: 61  LARTLLEGRDYVLVPQKVWEKLVQW 85
           L R L+E  DYVLVPQ+VW++LV+W
Sbjct: 98  LRRLLMERVDYVLVPQEVWKRLVEW 122


>AT4G10570.1 | Symbols: UBP9 | UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9);
           cysteine-type endopeptidase/ ubiquitin thiolesterase |
           chr4:6523657-6528058 REVERSE
          Length = 923

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 14/85 (16%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESDDLE 60
           WY SW++YV   +++                 S  A RPGPI+N +I+E+ S  + +D +
Sbjct: 52  WYTSWQEYVENSANEC------------STGESSEAPRPGPIDNHDIIESDS--DINDPQ 97

Query: 61  LARTLLEGRDYVLVPQKVWEKLVQW 85
           L R L+EG DYVLVP++VW++LV+W
Sbjct: 98  LRRLLVEGEDYVLVPKQVWKRLVEW 122


>AT1G32850.1 | Symbols: UBP11 | UBP11 (UBIQUITIN-SPECIFIC PROTEASE
           11); cysteine-type endopeptidase/ ubiquitin
           thiolesterase | chr1:11902629-11906900 FORWARD
          Length = 892

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 14/85 (16%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESDDLE 60
           WY  W+++VG     LL       +++F         RPGPI+N +I+++ S  ++ D +
Sbjct: 50  WYTRWQRFVG-----LL-------TEEFRSGEPSEVTRPGPIDNHDIIDSES--DASDPQ 95

Query: 61  LARTLLEGRDYVLVPQKVWEKLVQW 85
           L   L EG DY LV Q+VW KLV+W
Sbjct: 96  LRMMLEEGVDYTLVQQEVWRKLVKW 120


>AT2G40930.1 | Symbols: UBP5, ATUBP5, PDE323 | UBP5
           (UBIQUITIN-SPECIFIC PROTEASE 5); ubiquitin-specific
           protease | chr2:17076714-17082192 REVERSE
          Length = 924

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGE-SDDL 59
           W+  W +YV Q       DG S  S+      S    +P  I+NS+++ + S  + S+  
Sbjct: 48  WWQEWIEYVNQDQPCNTNDGSSL-SEHCDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTS 106

Query: 60  ELARTLLEGRDYVLVPQKVWEKLVQW 85
           E+  TL EGRDYVL+PQ+VW +L  W
Sbjct: 107 EIIETLQEGRDYVLLPQEVWNQLRSW 132