Jatropha Genome Database

JcCB0902641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0902641.10 - phase: 0 /pseudo/partial
         (104 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66030.1 | Symbols: ATGRIP, GRIP | ATGRIP; protein binding | ...    69   7e-13
AT5G66030.2 | Symbols: ATGRIP, GRIP | ATGRIP; protein binding | ...    69   7e-13

>AT5G66030.1 | Symbols: ATGRIP, GRIP | ATGRIP; protein binding |
           chr5:26405133-26409888 REVERSE
          Length = 788

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 47/60 (78%)

Query: 3   DLQDALAHRDKELAERDAALNNSKKQIKSIEIKLDSANARHQLEKEAWETNLQNLEESWK 62
           DLQ ALA  +KEL ER  AL ++ +QIKS+E+KLDS  AR+Q EK+AWE +L+ LEE+W+
Sbjct: 485 DLQSALASLEKELEERAGALKDASEQIKSLEVKLDSTVARNQAEKQAWEEDLRVLEETWR 544


>AT5G66030.2 | Symbols: ATGRIP, GRIP | ATGRIP; protein binding |
           chr5:26405133-26409888 REVERSE
          Length = 765

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 47/60 (78%)

Query: 3   DLQDALAHRDKELAERDAALNNSKKQIKSIEIKLDSANARHQLEKEAWETNLQNLEESWK 62
           DLQ ALA  +KEL ER  AL ++ +QIKS+E+KLDS  AR+Q EK+AWE +L+ LEE+W+
Sbjct: 485 DLQSALASLEKELEERAGALKDASEQIKSLEVKLDSTVARNQAEKQAWEEDLRVLEETWR 544