Jatropha Genome Database

JcCB0896111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0896111.10 - phase: 0 
         (79 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40460.1 | Symbols:  | unknown protein | chr5:16202465-162028...    71   1e-13
AT1G10690.1 | Symbols:  | unknown protein | chr1:3550236-3550568...    67   3e-12
AT1G60783.1 | Symbols:  | unknown protein | chr1:22375173-223754...    52   7e-08
AT3G27630.1 | Symbols:  | unknown protein | chr3:10231119-102314...    47   2e-06

>AT5G40460.1 | Symbols:  | unknown protein |
          chr5:16202465-16202803 FORWARD
          Length = 112

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 10/84 (11%)

Query: 1  MGFSGKPQVDNGLELDCKKWVIAGIPLRAPLK----------KIYTNPVDKESESDHDCS 50
          MGFS K Q + GLE D KKWVIAGI +RA LK          +I T   +     + +CS
Sbjct: 1  MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 51 TTPTSEESRISARLTCPPAPKKRK 74
          TTPT++E++I   L CPPAP+KR+
Sbjct: 61 TTPTAKETKIPELLECPPAPRKRR 84


>AT1G10690.1 | Symbols:  | unknown protein | chr1:3550236-3550568
          REVERSE
          Length = 110

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 49/80 (61%), Gaps = 6/80 (7%)

Query: 1  MGFSGKP--QVDNGLE--LDCKKWVIAGIPLRAPLKKIYTNP--VDKESESDHDCSTTPT 54
          MG+SGKP  Q+D  +    D KKWVIAGIP R+PLK+I  +P     E+E    C TTPT
Sbjct: 1  MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINLSPGVTVTETEEQDQCPTTPT 60

Query: 55 SEESRISARLTCPPAPKKRK 74
          +   RI     CP APKKRK
Sbjct: 61 AVSVRIPRVPPCPAAPKKRK 80


>AT1G60783.1 | Symbols:  | unknown protein |
          chr1:22375173-22375493 FORWARD
          Length = 106

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 1  MGFSGKP--QVDNGLE--LDCKKWVIAGIPLRAPLKKIYTNPVDKESESDHD-CSTTPTS 55
          MGFSGK   Q D       + KK VI GI L + +K I  +     +  D D C TTPT+
Sbjct: 1  MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSNTEDEDLCPTTPTA 60

Query: 56 EESRISARLTCPPAPKKRK 74
          +  RI   + CPPAPKKRK
Sbjct: 61 DSVRIPTVIPCPPAPKKRK 79


>AT3G27630.1 | Symbols:  | unknown protein |
          chr3:10231119-10231418 REVERSE
          Length = 99

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 1  MGFSGKPQVDNGLELDCKKWVIAGIPLRAPLKKIYTNPVDKESESDHDCSTTPTSEESRI 60
          MG S K QV   L+ D KK++ A   +RA LK + T  +  E ES+     TPT+  ++ 
Sbjct: 1  MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKTKLIKPERESEDGICITPTARGAKT 60

Query: 61 SARLTCPPAPKKR 73
               CP AP+KR
Sbjct: 61 PE---CPAAPRKR 70