Jatropha Genome Database

JcCB0894111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0894111.10 - phase: 2 /partial
         (233 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66730.1 | Symbols:  | zinc finger (C2H2 type) family protein...    75   4e-14
AT3G50700.1 | Symbols: AtIDD2 | AtIDD2 (Arabidopsis thaliana Ind...    72   3e-13

>AT5G66730.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr5:26641914-26643883 REVERSE
          Length = 500

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 4/75 (5%)

Query: 161 PADLAPPSSTEPISLCLSTSHGSSIFGTAGQERRQYAPP--PQPAMSATALLQKAAQIGA 218
           P+  AP SS EPISLCLST+   S+FG   ++   +  P  PQPAMSATALLQKAAQ+G+
Sbjct: 326 PSLFAPSSSMEPISLCLSTN--PSLFGPTIRDPPHFLTPLPPQPAMSATALLQKAAQMGS 383

Query: 219 AATNASLLRGFGIVS 233
             +  SLLRG GIVS
Sbjct: 384 TGSGGSLLRGLGIVS 398


>AT3G50700.1 | Symbols: AtIDD2 | AtIDD2 (Arabidopsis thaliana
           Indeterminate(ID)-Domain 2); nucleic acid binding /
           transcription factor/ zinc ion binding |
           chr3:18840945-18842829 FORWARD
          Length = 452

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 47/63 (74%), Gaps = 7/63 (11%)

Query: 171 EPISLCLSTSHGSSIFGTAGQERRQYAPPPQPAMSATALLQKAAQIGAAATNASLLRGFG 230
           EPISL LSTSHGSS  G+     R +A   QPAMSATALLQKAAQ+GAA++  SLL G G
Sbjct: 301 EPISLGLSTSHGSSFLGS----NRFHA---QPAMSATALLQKAAQMGAASSGGSLLHGLG 353

Query: 231 IVS 233
           IVS
Sbjct: 354 IVS 356