Jatropha Genome Database

JcCB0892281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0892281.10 - phase: 0 /pseudo/partial
         (80 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA bin...    71   1e-13

>AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA
           binding | chr3:4025276-4028999 REVERSE
          Length = 524

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 4/63 (6%)

Query: 4   SCKYGATCRYNHPDRNAINPPAAAISHPIVANPAANLNIGVINPAASLYQTIDPRLAQPM 63
           SCKYGATCRYNHP+R A  P AA +++ +V++  ANLN+G++ PA S YQT    L QP 
Sbjct: 354 SCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGLVTPATSFYQT----LTQPT 409

Query: 64  VWV 66
           + V
Sbjct: 410 LGV 412